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Platform GPL15708 Query DataSets for GPL15708
Status Public on Sep 05, 2012
Title Nimblegen D. yakuba custom 385K array (2007_06_22)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila yakuba
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description Nimblegen Drosophila yakuba custom design array (385K) for expression in D. yakuba, D. santomea and hybrids. An average of 10 array element probes per gene were selected without-bias vis-a-vis position within the gene model. Protein coding gene predictions were obtained from final genome assemblies (Comparative Assembly Freeze 1 CAF1, http://rana.lbl.gov/drosophila/caf1.html) and genome annotations in D. yakuba (GLEANR set, http://rana.lbl.gov/~venky/AAA/freeze_20061030/protein_coding_gene/GLEANR/annotation). See details of arrays see Llopart (2012).
The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files.
 
Submission date Jun 18, 2012
Last update date Sep 05, 2012
Contact name Ana Llopart
E-mail(s) ana-llopart@uiowa.edu
Phone 319-384-1880
Fax 319-335-1069
Organization name University of Iowa
Street address 469 Biology Building
City Iowa City
ZIP/Postal code 52242
Country USA
 
Samples (18) GSM949601, GSM949602, GSM949603, GSM949604, GSM949605, GSM949606 
Series (1)
GSE38793 Expression analysis of Drosophila yakuba, D. santomea and hybrids to evaluate the large-X effect using Nimblegen 60-mer custom made arrays

Data table header descriptions
ID
SPOT_ID

Data table
ID SPOT_ID
dyak_1000_FBgn0032175 similar to D. melanogaster FBgn0032175
dyak_10001_FBgn0038217 similar to D. melanogaster FBgn0038217
dyak_10002_FBgn0027083 similar to D. melanogaster FBgn0027083
dyak_10003_FBgn0038214 similar to D. melanogaster FBgn0038214
dyak_10005_FBgn0038213 similar to D. melanogaster FBgn0038213
dyak_10006_FBgn0027563 similar to D. melanogaster FBgn0027563
dyak_10007_FBgn0053329 similar to D. melanogaster FBgn0053329
dyak_10008_FBgn0053109 similar to D. melanogaster FBgn0053109
dyak_10009_FBgn0051326 similar to D. melanogaster FBgn0051326
dyak_1001_FBgn0051755 similar to D. melanogaster FBgn0051755
dyak_10010_FBgn0038211 similar to D. melanogaster FBgn0038211
dyak_10011_FBgn0011582 similar to D. melanogaster FBgn0011582
dyak_10012_FBgn0051327 similar to D. melanogaster FBgn0051327
dyak_10013_FBgn0051533 similar to D. melanogaster FBgn0051533
dyak_10014_FBgn0038209 similar to D. melanogaster FBgn0038209
dyak_10016_FBgn0038208 similar to D. melanogaster FBgn0038208
dyak_10017_FBgn0038207 similar to D. melanogaster FBgn0038207
dyak_10018_FBgn0010340 similar to D. melanogaster FBgn0010340
dyak_10019_FBgn0020510 similar to D. melanogaster FBgn0020510
dyak_10020_FBgn0038205 similar to D. melanogaster FBgn0038205

Total number of rows: 11530

Table truncated, full table size 685 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL15708_2007-06-22_Comeron_D_yakuba_expr.ndf.gz 24.2 Mb (ftp)(http) NDF
GPL15708_readme.txt 444 b (ftp)(http) TXT

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