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Platform GPL15739 Query DataSets for GPL15739
Status Public on Jun 25, 2012
Title Agilent-022520 Brassica napus 4x44K (Probe Name version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Brassica napus
Manufacturer Agilent Technologies
Manufacture protocol www.chem.agilent.com
 
Description The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL14582.
 
Submission date Jun 25, 2012
Last update date Jun 25, 2012
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (259) GSM951969, GSM951970, GSM951971, GSM951972, GSM951973, GSM951974 
Series (6)
GSE38905 Molecular mechanisms underpinning physiological tolerances to salinity and alkaline salinity in Brassica juncea
GSE53468 Comparative transcriptome analysis of Brassica napus L. male sterility induced by the Chemical Hybridization Agent Monosulfuron Ester Sodium
GSE81459 Whole genome expression profiling of Brassica juncea BnCRY2aOE transgenics vis-à-vis wild-type
Relations
Alternative to GPL14582 (Feature Number version)

Data table header descriptions
ID ProbeName
accessions
chr_coord
SubTypeMask
SubTypeName
Start
SEQUENCE Probe sequence
ProbeUID
ControlType
GeneName
GB_ACC GenBank accession
SPOT_ID

Data table
ID accessions chr_coord SubTypeMask SubTypeName Start SEQUENCE ProbeUID ControlType GeneName GB_ACC SPOT_ID
A_46_P076116 gb|AB270768|tc|TC63375 unmapped 0 2506 AACTGCGTGACGATGAAAATTGGACAGTGAACCAAATCACCATGTCGATCATTGACGCTC 25576 0 AB270768 AB270768
A_46_P076106 gb|AB270777|tc|NP1773515 unmapped 0 2561 GCCCGGTAATATGAAAGCCGTTCAGAAAGTTCATATAACTAAATATTACTAAATGGAGTG 7373 0 AB270777 AB270777
A_46_P008686 gb|AF024625|tc|TC63391 unmapped 0 2118 CGGAGTTATAGAACCGATCTTGTGATCTTTATATCTATGCATAAGTCTTCAATAAGAGAG 21050 0 AF024625 AF024625
A_46_P241594 gb|AF069772|ta|TA23742_3708|ta|DW998948|tc|TC80078 unmapped 0 592 CCAAAGAAGAGGAAGAAGTAAACAACCCAATCGCTTTGATCTTCTAACATTTTAGATTCA 930 0 AF069772 AF069772
A_46_P008781 gb|AF069772|tc|TC64280 unmapped 0 702 CCAGTTTCTTTAGCTTCTACTGTAATCTCTGTTGTTCCATGAATCAAAAAGACCTTTGTT 5197 0 AF069772 AF069772
A_46_P209594 gb|AF084554|ta|TA24136_3708|ta|TA24138_3708|ta|CD838581 unmapped 0 786 GTGTTGTAACTGTTATATACTTTACTCGTTGGAGAGTTGTAAATGGATGTAACTCTTGGA 37365 0 AF084554 AF084554
A_46_P008886 gb|AF094825|tc|TC63435 unmapped 0 1605 GCATGGTGAACTTTTTGAGGGTTCTTACTTCTTTATACATTTTTTAATCCTCCAGTGTTC 16021 0 AF094825 AF094825
A_46_P008761 gb|AF106954|tc|TC63560 unmapped 0 897 ATTCCTTGGATTACAAGAAATCTGTCGGAGACCTTGTGGAAGAGTCGGATGTGGTGAATC 31086 0 AF106954 AF106954
A_46_P008836 gb|AF111161|ta|TA29898_3708|tc|TC63524 unmapped 0 475 CATTGCTAAGCTTTGGGCTTCCATAAGCATCTACCCGTTTTACAAAACAGACATCCAAGG 20355 0 AF111161 AF111161
A_46_P250229 gb|AF111812|ta|DY012072|tc|TC63480 unmapped 0 1366 GTTTCTTATTTCTCTTTAAGGATGCTTGTGATGATGCTCTGGTCCTTAAGTAAGCAAAAA 23362 0 AF111812 AF111812
A_46_P007506 gb|AF111812|ta|TA21483_3708|ta|TA21481_3708|ta|DY012072 unmapped 0 1358 TTACCTTTGTTTCTTATTTCTCTTTAAGGATGCTTGTGATGATGCTCTGGTCCTTAAGTA 27710 0 AF111812 AF111812
A_46_P136354 gb|AF111812|ta|TA21488_3708|ta|TA21483_3708|ta|TA21481_3708 unmapped 0 1174 AATGCTTCTAAGTGTTTCTGCCTTCTGGTTCGTGGTGGTGAGTGTGGTACGATCTATATC 40069 0 AF111812 AF111812
A_46_P008796 gb|AF118382|ta|TA25467_3708|tc|TC69841 unmapped 0 1009 CGTTGAGTGCAATTGTTCTTATTTTACGCCAATGCCAAGTTTATGAAGTGACTAGAATTG 16687 0 AF118382 AF118382
A_46_P308935 gb|AF118383|gb|EV122475|ta|TA29607_3708|tc|TC66213 unmapped 0 943 TCTTTTTCTAATTTCTGGCATCAGTGTGGGGATATATGTGAATGAATGTTTGTGTGATCG 38413 0 AF118383 AF118383
A_46_P003351 gb|AF118383|ta|TA29607_3708|tc|TC93528 unmapped 0 963 TCAGTGTGGGGATATATGTGAATGAATGTTTGTGTGATCGGGGAAAACAATCTTAATGAA 32781 0 AF118383 AF118383
A_46_P008831 gb|AF150059|tc|TC88040 unmapped 0 436 CGAGGAGTTTGTCAAGGTGATGATGGCTAAGTGATCAATCTGCCTCTTTCTGAAACCTTA 8211 0 AF150059 AF150059
A_46_P008891 gb|AF153128|tc|TC63954 unmapped 0 613 GAAGGAGTGAATGCGAAGAAGGATTAAGCTTCATGTTATGCTAAGATTTCTCTAATGCTA 14967 0 AF153128 AF153128
A_46_P150864 gb|AF155224|ta|TA25897_3708|ta|AF251794|tc|TC72365 unmapped 0 185 TATTATCACCATGACCGAGGTCTTGTATCCAGTCTATGTCACTCTAAGGTGTGATTCCGC 16023 0 AF155224 AF155224
A_46_P204499 gb|AF155224|ta|TA25897_3708|ta|CD832537|ta|AF251794 unmapped 0 85 GTTGTCTCTCCCTTTCAATCTTTCCTTTGGCGGCCTTTACCGTCGAGAAATTAGTACTTC 12748 0 AF155224 AF155224
A_46_P374545 gb|AF155224|tc|TC106968|tc|TC63470|tc|TC70409 unmapped 0 1259 TCTCGTCTTTTAACAAGCCCATAAAGAAAAGTAGACTGAGATAATTGGATTCTGTTATGC 1895 0 AF155224 AF155224

Total number of rows: 43663

Table truncated, full table size 6295 Kbytes.




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