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Platform GPL15767 Query DataSets for GPL15767
Status Public on Jan 01, 2013
Title Agilent-033937 Strongylocentrotus purpuratus 105K v2 (Probe version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Strongylocentrotus purpuratus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16033937 or 2533937.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** The SPU_* identifiers correspond to putative gene sequences from genome build 3.1 and can be found in the sea urchin genome database (www.spbase.org).***
 
Submission date Jul 05, 2012
Last update date Jan 01, 2013
Contact name Tyler G Evans
E-mail(s) tyler.evans@lifesci.ucsb.edu, tylergevans@gmail.com
Phone 8058936176
Fax 8058938062
Organization name University of California Santa Barbara
Department Ecology, Evolution and Marine Biology
Lab Hofmann
Street address Marine Science Institute
City Santa Barbara
State/province California
ZIP/Postal code 93106-9620
Country USA
 
Samples (36) GSM921059, GSM921060, GSM921061, GSM921062, GSM921063, GSM921064 
Series (2)
GSE37522 Response to elevated pCO2 in Strongylocentrotus purpuratus larvae
GSE39125 Synergistic effects of temperature and pCO2 on growth, development and gene expression of Strongylocentrotus purpuratus larvae
Relations
Alternative to GPL15481

Data table header descriptions
ID gene
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SPOT_ID

Data table
ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SPOT_ID
SPU_000001 FALSE SPU_000001 unmapped SPU_000001
SPU_000002 FALSE SPU_000002 unmapped SPU_000002
SPU_000003 FALSE SPU_000003 unmapped SPU_000003
SPU_000004 FALSE SPU_000004 unmapped SPU_000004
SPU_000005 FALSE SPU_000005 unmapped SPU_000005
SPU_000006 FALSE SPU_000006 unmapped SPU_000006
SPU_000007 FALSE SPU_000007 unmapped SPU_000007
SPU_000008 FALSE SPU_000008 unmapped SPU_000008
SPU_000009 FALSE SPU_000009 unmapped SPU_000009
SPU_000010 FALSE SPU_000010 unmapped SPU_000010
SPU_000011 FALSE SPU_000011 unmapped SPU_000011
SPU_000012 FALSE SPU_000012 unmapped SPU_000012
SPU_000013 FALSE SPU_000013 unmapped SPU_000013
SPU_000014 FALSE SPU_000014 unmapped SPU_000014
SPU_000015 FALSE SPU_000015 unmapped SPU_000015
SPU_000016 FALSE SPU_000016 unmapped SPU_000016
SPU_000017 FALSE SPU_000017 unmapped SPU_000017
SPU_000018 FALSE SPU_000018 unmapped SPU_000018
SPU_000019 FALSE SPU_000019 unmapped SPU_000019
SPU_000020 FALSE SPU_000020 unmapped SPU_000020

Total number of rows: 28819

Table truncated, full table size 1350 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
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