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Platform GPL15776 Query DataSets for GPL15776
Status Public on Jan 01, 2013
Title Agilent-024824 Bombyx mori custom array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Bombyx mori
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16024824 or 2524824.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Agilent-024824 Unigene
custom made (8x16k) Oligo Microarray (Agilent Technologies, Inc.).
 
Submission date Jul 06, 2012
Last update date Jan 01, 2013
Contact name Takumi Nishiuchi
E-mail(s) tnish9@staff.kanazawa-u.ac.jp
Organization name Kanazawa University
Street address 13-1 Takaramachi
City Kanazawa
ZIP/Postal code 920-0934
Country Japan
 
Samples (10) GSM960638, GSM960639, GSM960640, GSM960641, GSM960642, GSM960643 
Series (1)
GSE39306 Identification of Hr38 as a neural activity-induced gene

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING retired UnigeneIDs, SilkDB GeneIds, etc.
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_3490_PI417506041 CUST_3490_PI417506041 FALSE UG|Bmo#S18421416 unmapped TCATAGGGATGAAGATATGTTAGATGTAGATTCTATTGGTTTTACCTACTTAGAAGCTCC
5 96 156 CUST_6440_PI417506041 CUST_6440_PI417506041 FALSE UG|Bmo#S24626872 unmapped GAAGAACTAAGAATAGCTTGGGTTCTATGGATTTCCAGTTAAATATTGACTCGTGAACTC
6 96 154 CUST_3742_PI417506041 CUST_3742_PI417506041 FALSE UG|Bmo#S18424009 unmapped GGAAACTACCTGGTTGACTATATTATGTAATACCGTATAGTTGTGATTTGTGCAATGAGT
7 96 152 CUST_10377_PI417506041 CUST_10377_PI417506041 FALSE UG|Bmo#S32366434 unmapped CGAAGCTTGTAATGAAGTAGTAACAATTCATAATATAACTCAACCACAGTTTCGCATTCC
8 96 150 CUST_8324_PI417506041 CUST_8324_PI417506041 FALSE UG|Bmo#S32366645 unmapped ATAGTTAATAGAGAAAAATTTGATCAATGGAAAGACGACACAAAGAACACCTTACAGCCC
9 96 148 CUST_6020_PI417506041 CUST_6020_PI417506041 FALSE UG|Bmo#S18465054 unmapped GCCTCGAAGTTATGAGGATAGCGCCATTCACATTATGACATATCTTTTGTAATCACATAA
10 96 146 CUST_7712_PI417506041 CUST_7712_PI417506041 FALSE UG|Bmo#S32775768 unmapped TTGCCGATTTATTTTTCTTTTTGTCTAGCAAACCGACGCCGGGGGACGGATATTGTTGGA
11 96 144 CUST_1253_PI417506041 CUST_1253_PI417506041 FALSE UG|Bmo#S18424089 unmapped CTCAGGTTGAAGCGGTTCGGAGGGAAATTACCTTTATATTTTGGGCGTTCTGCGAAAAAA
12 96 142 CUST_3285_PI417506041 CUST_3285_PI417506041 FALSE UG|Bmo#S31276580 unmapped CCATTGTTGGCAACTGTCATTACGTCTGTATGGACATTATTTTTTATTTAGTGCTTACAC
13 96 140 CUST_2671_PI417506041 CUST_2671_PI417506041 FALSE UG|Bmo#S18415545 unmapped CTATAGAAAGACTACATTGTGACACAAATCCATGTAGCAGTACTGAAGAAAAACCATAAC
14 96 138 CUST_1477_PI417506041 CUST_1477_PI417506041 FALSE UG|Bmo#S18480258 unmapped GGTGCAGTAAGTAGGCTTGGCTAAATTATGTAATGCACCTGTAACTAATAATATTTCCCA
15 96 136 CUST_2716_PI417506041 CUST_2716_PI417506041 FALSE UG|Bmo#S18415764 unmapped AGTCTGGGCATCCAAATGTATATGAAAACGGAGATCTTTGCATATCGATTCTCCACCCGC
16 96 134 CUST_6272_PI417506041 CUST_6272_PI417506041 FALSE UG|Bmo#S18474923 unmapped CCTGATACCCATACTGCTTGATGCTTGCCCTGATCTCAAATTAATAAAAAACAATAAAGG
17 96 132 CUST_1571_PI417506041 CUST_1571_PI417506041 FALSE UG|Bmo#S18429004 unmapped TTTAGCTTTGGTAAGTATTGTTACGGTGCGAGGTTCTAGTCGATGCGACTACGGACTCTT
18 96 130 CUST_10457_PI417506041 CUST_10457_PI417506041 FALSE UG|Bmo#S46617187 unmapped TGTCTCGAGAAGAACTGCCCTTGAAATAACTAGAAGAAGAATAGATTTCGATTTACCAGA
19 96 128 CUST_3140_PI417506041 CUST_3140_PI417506041 FALSE UG|Bmo#S18418351 unmapped TGAACAATTTTAAATTATTAACCCCGGTCGTCAGATACACGAGCGGACGCTGCGTGCATT
20 96 126 CUST_9895_PI417506041 CUST_9895_PI417506041 FALSE UG|Bmo#S46643443 unmapped TTCTTCTCAACTATTTACTGACACATCCGATAACGTGTGCCATACAGTAGTTGGCTCGCC

Total number of rows: 15744

Table truncated, full table size 2271 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL15776_024824_D_GEO_20090731.txt.gz 613.6 Kb (ftp)(http) TXT

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