NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL159 Query DataSets for GPL159
Status Public on Oct 01, 2002
Title Atlas Select Human Oncogene Array (Cat. #7831-1)
Technology type spotted DNA/cDNA
Distribution commercial
Organism Homo sapiens
Manufacturer BD Biosciences Clontech
Manufacture protocol see manufacturer's web site
 
Description Contains genes shown to be differentially expressed in cell lines transformed by ErbB2 and N-Ras.
 
Web link http://www.clontech.com/atlas/index.shtml
Submission date Apr 24, 2002
Last update date Apr 09, 2008
Organization BD Biosciences Clontech
E-mail(s) tech@clontech.com
Phone 877-232-8995
URL http://www.clontech.com
Street address 1020 East Meadow Circle
City Palo Alto
State/province CA
ZIP/Postal code 94303-4230
Country USA
 

Data table header descriptions
ID unique reference number used by BD Biosciences Clontech to identify each gene in collection
GENE_NAME set of names commonly used for the gene, based on the current literature
COORDINATE array coordinate
GB_LIST GenBank accession number
SP_LIST SwissProt accession number
SELECT_METHOD
HOMOLOGY homology
GENE Entrez GENE ID
DESC description
CLASSIFICATION set of functional classifications for the gene

Data table
ID GENE_NAME COORDINATE GB_LIST SP_LIST SELECT_METHOD HOMOLOGY GENE DESC CLASSIFICATION
N421 phospholipase A2; tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta polypeptide (YWHAZ); 14-3-3 protein zeta/delta; protein kinase C inhibitor protein 1 (KCIP1); factor activating exoenzyme S (FAS) A1a M86400 P29312, P29213 subtraction between MCF7 & MCF7-ErbB2 (both directions) known 7534 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide FT09 SC00
H207 signal transducer CD24 precursor A1b M58664 P25063 subtraction between MCF7 & MCF7-ErbB2 (both directions) known 934 CD24 antigen (small cell lung carcinoma cluster 4 antigen) FA00 SB00
CA189 upregulated by 1,25-dihydroxyvitamin D3 protein (VDUP1); HHCPA78 homolog A1c S73591 Q16226 subtraction between MCF7 & MCF7-ErbB2 (both directions) known 10628 upregulated by 1,25-dihydroxyvitamin D-3 FX00 SX00
AH1253 ubiquitin-conjugating enzyme E2; ubiquitin-protein ligase; ubiquitin carrier protein A1d AF031141 O14933 subtraction between MCF7 & MCF7-ErbB2 (both directions) known 9246 ubiquitin-conjugating enzyme E2L 6 FU06 SC00 SN00
SO001 RET proto-oncogene A1e AJ243297 subtraction between MCF7 & MCF7-ErbB2 (both directions) known similar to partial RET gene
H100 dihydrodiol dehydrogenase; chlordecone reductase A1f U05598, S68287 P42330, P17516 subtraction between MCF7 & MCF7-ErbB2 (both directions) known 1646 aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III) FL05 FH03 SC00
AH745 actin-like 6 protein (ACTL6); BAF complex 53-kDa subunit (BAF53A) A1g AF041474 O96019 subtraction between MCF7 & MCF7-ErbB2 (both directions) known 86 actin-like 6 protein (ACTL6); BAF complex 53-kDa subunit (BAF53A)
AH413 60S ribosomal protein L14 (RPL14); CAG-ISL 7 A1h D87735 P50914, Q92579 subtraction between MCF7 & MCF7-ErbB2 (both directions) known 9045 ribosomal protein L14 FN01 SC00 SN00
SO002 novel gene (SO002) A1i subtraction between MCF7 & MCF7-ErbB2 (both directions) novel novel gene (SO002)
SO003 KIAA0107 A1j D14663 Q15008 subtraction between MCF7 & MCF7-ErbB2 (both directions) EST similar to mRNA for KIAA0107 gene
SO004 estrogen-regulated LIV-1 protein A1k U41060 Q13433 subtraction between MCF7 & MCF7-ErbB2 (both directions) known similar to breast cancerestrogen regulated LIV-1 protein (LIV-1) mRNA
SO005 chromosome 8q21 BAC clone 521F14 (Research Genetics human fibroblast cell line 978SK BAC library) A1l AB015752 subtraction between MCF7 & MCF7-ErbB2 (both directions) EST similar to genomic DNAchromosome 8q21BAC clone 521F14
SO006 VAMP-associated protein C (VAPC) A1m AF086629 O95293 subtraction between MCF7 & MCF7-ErbB2 (both directions) known similar to VAMP-associated protein C (VAP-C) mRNA
SO007 STS clone WI-16567 A1n G21969 subtraction between MCF7 & MCF7-ErbB2 (both directions) EST similar to STS WI-16567sequence tagged site
SO008 novel gene (SO008) A2a subtraction between MCF7 & MCF7-ErbB2 (both directions) novel novel gene (SO008)
AH1434 importin alpha 2 subunit; karyopherin alpha 2 subunit; SRP1-alpha; RAG cohort protein 1 A2b U09559 P52292 subtraction between MCF7 & MCF7-ErbB2 (both directions) known 3838 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) FK01 SC00 SN00 SU00
AH166 high mobility group protein 1 (HMG1) A2c X12597 P09429 subtraction between MCF7 & MCF7-ErbB2 (both directions) known 3146 high-mobility group (nonhistone chromosomal) protein 1 FQ07 SN00
B56 nucleophosmin (NPM); nucleolar phosphoprotein B23; numatrin A2d M23613 P08693, Q12826, Q14115, Q13440, Q13441, P06748 subtraction between MCF7 & MCF7-ErbB2 (both directions) known 4869 nucleophosmin (nucleolar phosphoprotein B23, numatrin) FG00 FK05 SN00
SO009 membrane component chromosome 4 surface marker 1 (M4S1); gastrointestinal tumor-associated antigen 2 (GA733-2) A2e M33011 P16422, P18180 subtraction between MCF7 & MCF7-ErbB2 (both directions) known similar to (clone GA733-2-2) carcinoma-associated antigen GA733-2 mRNA
SO010 novel gene (SO010) A2f subtraction between MCF7 & MCF7-ErbB2 (both directions) novel novel gene (SO010)

Total number of rows: 587

Table truncated, full table size 110 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap