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Platform GPL15979 Query DataSets for GPL15979
Status Public on Aug 25, 2012
Title miRXplore TM Microarray (878)
Technology type spotted oligonucleotide
Distribution commercial
Organisms Homo sapiens; Mus musculus; Rattus norvegicus
Manufacturer Miltenyi Biotec GmbH, Cologne, Germany
Manufacture protocol 1.2 nl of 10 µM HPLC purified, 5’ amino-modified DNA oligonucleotides (Metabion) were spotted on aminopropyltrimethoxysilane / phenylendiisothiocyanate coated glass slides in quadruplicates using a customized piezoelectric spotter.
 
Description The miRXplore TM Microarray is composed of 5884 DNA oligonucleotides with a sequence being reverse complement to the respective mature miRNA or control RNA, representing a total of 1374 miRNA sequences and 97 controls with all probes spotted in quadruplicates. The 1374 miRNA sequences covered sequence verified miRNAs of the species human (859) mouse (622) and rat (428) as well as viral miRNAs (129) as deposited in the miRBase sequence database version 12.0. The 97 positive and negative control probes were chosen as follows. Three sets of controls, miRControl 1 (four sequences used to assess efficiency and sensitivity of labelling), miRControl 2 (single sequence used to assess efficiency of small RNA enrichment) and miRControl 3 (43 sequences used to normalize signal intensities across different samples and arrays) were artificial sequences chosen not be present in any of the human, mouse, rat or viral genome. A fourth set of positive controls presented 36 positive small but non-miRNA sequences including probes e.g. for 5.1 sRNA, tRNAs, and U6 RNAs. A fifth set of oligonucleotides included 13 negative controls like different single or double mismatch, antisense, or scrambled miRNA sequences. Microarrays were manufactured by Miltenyi Biotec.
 
Web link http://www.miltenyibiotec.com
Contributor(s) Gerstmayer B, Bosio A
Submission date Aug 23, 2012
Last update date Aug 25, 2012
Contact name Silvia Rueberg
E-mail(s) silvia@miltenyibiotec.de
Organization name Miltenyi Biotec GmbH
Department Genomic Services
Street address Friedrich-Ebert-Str. 68
City Bergisch Gladbach
ZIP/Postal code 51429
Country Germany
 
Samples (8) GSM997371, GSM997372, GSM997373, GSM997374, GSM997375, GSM997376 
Series (3)
GSE40587 miRNA expression in Blimp-1-deficient dendritic cells
GSE46324 Identification of miRNAs regulated by TGF-b in human CD8+ T cells (expression)
GSE46325 Identification of miRNAs regulated by TGF-b in human CD8+ T cells

Data table header descriptions
ID
stem-loop_acc Stem-loop_acc
mature_acc Mature_acc
name miRNA Name
miRNA_ID_LIST miRNA identifiers
SPOT_ID
miltenyi_id cDNA identifier at Miltenyi Biotec GmbH

Data table
ID stem-loop_acc mature_acc name miRNA_ID_LIST SPOT_ID miltenyi_id
1 MI0000558, MI0000829, MI0000063, MI0005453, MI0005351, MI0001172 MIMAT0000522, MIMAT0000775, MIMAT0000063, MIMAT0004331, MIMAT0004162, MIMAT0001102 LET-7B LET-7B 35816
2 MI0000064, MI0000559, MI0000560, MI0000830, MI0000831, MI0005454, MI0002445, MI0001174 MIMAT0000776, MIMAT0000523, MIMAT0000064, MIMAT0004332, MIMAT0002151, MIMAT0001104 LET-7C LET-7C 35817
3 MI0000103, MI0000739, MI0000148, MI0000886, MI0002719, MI0004735, MI0002717, MI0002723, MI0002725, MI0005283, MI0005282, MI0002720, MI0002722, MI0002721, MI0002718, MI0001270, MI0016974, MI0007610 MIMAT0000133, MIMAT0000099, MIMAT0000823, MIMAT0002427, MIMAT0003520, MIMAT0002425, MIMAT0002431, MIMAT0002433, MIMAT0004098, MIMAT0002428, MIMAT0002430, MIMAT0002429, MIMAT0002426, MIMAT0001185 MIR-101-101C MIR-101, MIR-101C 35823
4 MI0000266, MI0000685, MI0000841, MI0002791, MI0005007, MI0002788, MI0005273, MI0002792, MI0002790 MIMAT0000782, MIMAT0000648, MIMAT0000253, MIMAT0002489, MIMAT0003786, MIMAT0002486, MIMAT0004089, MIMAT0002490, MIMAT0002488 MIR-10A MIR-10A 35824
5 MI0000442, MI0000256, MI0000891, MI0005063, MI0005287, MI0002413, MI0001277, MI0001280 MIMAT0000827, MIMAT0000246, MIMAT0000421, MIMAT0003849, MIMAT0004101, MIMAT0002119, MIMAT0001190 MIR-122 MIR-122 35826
6 MI0000897, MI0000446, MI0000470, MI0000152, MI0000725, MI0000896, MI0002510, MI0002575, MI0004753, MI0005457, MI0002509, MI0002574, MI0002514, MI0002579, MI0002517, MI0002581, MI0005291, MI0005292, MI0002511, MI0002513, MI0002578, MI0002512, MI0002577, MI MIMAT0000830, MIMAT0000136, MIMAT0000423, MIMAT0002221, MIMAT0003539, MIMAT0002220, MIMAT0002225, MIMAT0002228, MIMAT0004103, MIMAT0002222, MIMAT0002224, MIMAT0002223, MIMAT0002226, MIMAT0002120, MIMAT0001105 MIR-125B MIR-125B 35830
7 MI0000471, MI0000153, MI0000898, MI0004754, MI0001244 MIMAT0000137, MIMAT0000444, MIMAT0000831, MIMAT0004328, MIMAT0003723 MIR-126-5P MIR-126-5P 35832
8 MI0000473, MI0000585, MI0000637, MI0000902 MIMAT0000601, MIMAT0000544, MIMAT0004605, MIMAT0017120 MIR-129-3P MIR-129-3P 35835
9 MI0000252, MI0000473, MI0000222, MI0000585, MI0000637, MI0000902, MI0005294 MIMAT0000600, MIMAT0000209, MIMAT0000242, MIMAT0004105 MIR-129-5P MIR-129-5P 35836
10 MI0000448, MI0000156, MI0000903, MI0002525, MI0002524, MI0002526, MI0002527 MIMAT0000836, MIMAT0000141, MIMAT0000425, MIMAT0002236, MIMAT0002235, MIMAT0002237, MIMAT0002238 MIR-130A MIR-130A 35837
11 MI0000904, MI0000748, MI0000408 MIMAT0000837, MIMAT0000387, MIMAT0000691 MIR-130B MIR-130B 35838
12 MI0000474, MI0000160, MI0000907, MI0002589, MI0002591, MI0002592, MI0002590 MIMAT0000840, MIMAT0000447, MIMAT0000146, MIMAT0002288, MIMAT0002290, MIMAT0002291, MIMAT0002289 MIR-134 MIR-134 35841
13 MI0000475, MI0000162, MI0000909, MI0002594, MI0001523, MI0002596, MI0002593, MI0002595, MI0002452 MIMAT0000148, MIMAT0000448, MIMAT0000842, MIMAT0002293, MIMAT0001417, MIMAT0002295, MIMAT0002292, MIMAT0002294, MIMAT0002158 MIR-136 MIR-136 35843
14 MI0000454, MI0000163, MI0000910, MI0005299, MI0001221 MIMAT0000843, MIMAT0000429, MIMAT0000149, MIMAT0004110, MIMAT0001153 MIR-137 MIR-137 35844
15 MI0000456, MI0000611, MI0000165, MI0002547, MI0002437, MI0001229 MIMAT0000573, MIMAT0000431, MIMAT0000151, MIMAT0002255, MIMAT0002143, MIMAT0001159 MIR-140-5P MIR-140-5P 35847
16 MI0000457, MI0000166, MI0000914, MI0002487, MI0002485, MI0002489 MIMAT0000846, MIMAT0000153, MIMAT0000432, MIMAT0002198, MIMAT0002196, MIMAT0002200 MIR-141 MIR-141 35849
17 MI0000917, MI0000460, MI0000168, MI0002556, MI0002557, MI0002554, MI0002555 MIMAT0000156, MIMAT0000436, MIMAT0000850, MIMAT0002264, MIMAT0002265, MIMAT0002262, MIMAT0002263 MIR-144 MIR-144 35854
18 MI0000461, MI0000169, MI0000918, MI0004756, MI0002560, MI0002558, MI0002562, MI0005305, MI0002559, MI0002561, MI0002417 MIMAT0000851, MIMAT0000157, MIMAT0000437, MIMAT0003542, MIMAT0002268, MIMAT0002266, MIMAT0002270, MIMAT0004116, MIMAT0002267, MIMAT0002269, MIMAT0002123 MIR-145 MIR-145 35855
19 MI0000477, MI0000170, MI0000919, MI0001235 MIMAT0000852, MIMAT0000158, MIMAT0000449, MIMAT0001163 MIR-146A MIR-146A 35856
20 MI0000253, MI0000550, MI0004737, MI0002418, MI0001189 MIMAT0000516, MIMAT0000243, MIMAT0003522, MIMAT0002124, MIMAT0001120 MIR-148A MIR-148A 35857

Total number of rows: 1471

Table truncated, full table size 122 Kbytes.




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