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Platform GPL16019 Query DataSets for GPL16019
Status Public on Sep 05, 2015
Title Agilent-015932 015932_D_20070204
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Xenopus laevis
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number Agilent-015932
 
Description
User Design

Arrays of this design have barcodes that begin with 16015932 or 2515932.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Sep 05, 2012
Last update date Sep 05, 2015
Contact name Yuzuru Ito
Organization name National Institute of Advanced Industrial Science and Technology (AIST)
Department Biotechnology Research Institute for Drug Discovery
Street address Central 6, Higashi 1-1-1
City Tsukuba
State/province Ibaraki
ZIP/Postal code 3058566
Country Japan
 
Samples (13) GSM997986, GSM997987, GSM997988, GSM997989, GSM997990, GSM997991 
Series (1)
GSE40620 Gene expression in Xenopus laevis embryogenesis

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GB_ACC ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 Xl#S13589877_1798 Xl#S13589877_1798 FALSE AB045380 AB045380 unmapped TAGAGTCAACAGTAAAGGGCTGATTCCCAGTAATATCTGTGGAAAGTGCAAATACATTTG
13 266 146 Xl#S13590103_2784 Xl#S13590103_2784 FALSE X88927 X88927 unmapped CCCAAACACCTTTCCCAAGGTTAACAAGAAGGAACTCAAAAATACCCCATTCCGAAGGGT
14 266 144 Xl#S21696607_2837 Xl#S21696607_2837 FALSE BC080990 BC080990 unmapped TAGGCTGAACAGCAAGCAAAAAGATTACAATACCAACTGTGTCTTAGTATGTCTGTTCTT
15 266 142 Xl#S19874725_4741 Xl#S19874725_4741 FALSE BC070788 BC070788 unmapped TTTTGTATGCCTCCGTTTCTAAGGCTATTTTGGTACTTTTTTCTTTTAGTCCCGGGGAGG
16 266 140 Xl#S21561559_1440 Xl#S21561559_1440 FALSE BC080108 BC080108 unmapped GAACTTATAGGAGGGAAGGGTGCTAGAACAGTTCTAAAATAACATGAAACTGTCTAGTAA
17 266 138 Xl#S26459775_777 Xl#S26459775_777 FALSE DT069960 DT069960 unmapped CCTCTTCCTTTGCTCGTGTTTGAATCTCCTTTACCCTCTGCCATTTGCATGTTCTAAGAA
18 266 136 Xl#S13798514_847 Xl#S13798514_847 FALSE BQ724877 BQ724877 unmapped AAACATACATTGGGGACCACATGGAAGGAATTTTTGGTTACGGGGGCCCTTACAAGACAT
19 266 134 Xl#S25080897_1678 Xl#S25080897_1678 FALSE BC097707 BC097707 unmapped ACCCTTGATAAATCTGACCCTCAGAACCAGGAGTTGTCTCAAATATAGTGGGGAAGAGAC
20 266 132 Xl#S13637179_377 Xl#S13637179_377 FALSE BF428021 BF428021 unmapped TAGCTGGATTCTGTGGATGACTTCAGAATGTATTGCTCAGCACCGTATAACCAAATCGAC

Total number of rows: 45220

Table truncated, full table size 6102 Kbytes.




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