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Platform GPL16106 Query DataSets for GPL16106
Status Public on Sep 26, 2012
Title Affymetrix Rice Genome Array [custom affyricechipalt.cdf]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Oryza sativa
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description The custom CDF was built using affyprobe miner software (http://www.ncbi.nlm.nih.gov/pubmed/17660211, available http://discover.nci.nih.gov/affyprobeminer/). Probes were mapped to NCBI rice transcript ccds sequences, requiring perfect matches and a minimum of 5 probes per transcript.
 
Submission date Sep 26, 2012
Last update date Oct 12, 2012
Contact name Andrew Cal
E-mail(s) andrew.j.cal@gmail.com
Phone 7166629259
Organization name International Rice Research Institute
Street address DAPO BOX 7777
City Metro Manila
ZIP/Postal code 11111
Country Philippines
 
Samples (18) GSM1009510, GSM1009511, GSM1009512, GSM1009513, GSM1009514, GSM1009515 
Series (1)
GSE41159 Gene expression from the rice leaf elongation zone of 7th leaf under various soil moisture treatments
Relations
Affiliated with GPL2025 (Alternative CDF [official])

Data table header descriptions
ID
GB_LIST GenBank Accession number(s)
STRAND
ENTREZGENEID
ORF Locus tag
MSU MSU Rice Genome Annotation Project identifier

Data table
ID GB_LIST STRAND ENTREZGENEID ORF MSU
RiceHF1 NM_001071294.1 0 4348798 Os10g0457000 Os10g31900
RiceHF10 NM_001068692.1 0 4345949 Os08g0500500 Os08g39120
RiceHF100 NM_001058193.1 0 4334525 Os03g0809400 Os03g59480
RiceHF1000 NM_001062895.1 0 4339651 Os05g0568900 Os05g49380
RiceHF10000 NM_001058801.1 0 4335196 Os04g0220300 Os04g14304
RiceHF10001 NM_001071484.1 0 4348998 Os10g0495200 Os10g35240
RiceHF10002 NM_001070159.1 0 4347528 Os09g0508900 Os09g33470
RiceHF10003 NM_001066920.1 0 4344023 Os07g0635300 Os07g44130
RiceHF10004 NM_001059047.1 0 4335531 Os04g0346100 Os04g27860
RiceHF10005 NM_001057972.1 0 4334293 Os03g0776900 Os03g56540
RiceHF10006 NM_001057682.1 0 4333981 Os03g0728500 Os03g51870
RiceHF10007 NM_001065046.1 0 4341998 Os06g0704700 Os06g49120
RiceHF10008 NM_001062500.1 0 4339232 Os05g0500600 Os05g42130
RiceHF1001 NM_001053734.1 0 4329737 Os02g0573000
RiceHF10010 NM_001056810.1 0 4333018 Os03g0390400 Os03g27290
RiceHF10011 NM_001053825.1 0 4329833 Os02g0591900 Os02g37880
RiceHF10012 NM_001061935.1 0 4338637 Os05g0381600 Os05g31690
RiceHF10013 DQ201201.1, NM_001053128.1 0 4329060 Os02g0291000 Os02g18880
RiceHF10014 NM_001068327.1 0 4345557 Os08g0412100 Os08g31800
RiceHF10015 NM_001068624.1 0 4345879 Os08g0485600 Os08g37904

Total number of rows: 23945

Table truncated, full table size 1400 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL16106_affyricechipalt_cdf.txt.gz 2.1 Mb (ftp)(http) TXT

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