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Platform GPL16112 Query DataSets for GPL16112
Status Public on Jul 16, 2013
Title [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array [Custom CDF: ATH1121501_At_TAIRG, Version 14.0.0]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Arabidopsis thaliana
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
Description v14.0.0 Arabidopsis CustomCDF from
Submission date Sep 28, 2012
Last update date Jul 18, 2013
Contact name Simon Peter Pearce
Organization name University of Nottingham
Department Plant and Crop Sciences
Street address Sutton Bonington Campus
City Sutton Bonington
State/province Leicestershire
ZIP/Postal code LE12 5RD
Country United Kingdom
Samples (163) GSM1010602, GSM1010603, GSM1010604, GSM1010605, GSM1010606, GSM1010607 
Series (4)
GSE41212 Arabidopsis thaliana seed germination timecourse
GSE49399 DELLA targets in proliferating leaf tissue
GSE49981 Reciprocal transcriptional responses in the interaction between Arabidopsis thaliana and Tetranychus urticae.
Affiliated with GPL198 (Alternative CDF [official])

Data table header descriptions
ID Probe Set Name
ORF Locus tag

Data table
AT1G01010_at AT1G01010 Symbols: ANAC001, NAC001 | NAC domain containing protein 1 | chr1:3631-5899 FORWARD LENGTH=1688
AT1G01030_at AT1G01030 Symbols: NGA3 | AP2/B3-like transcriptional factor family protein | chr1:11649-13714 REVERSE LENGTH=1905
AT1G01040_at AT1G01040 Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | dicer-like 1 | chr1:23146-31227 FORWARD LENGTH=6251
AT1G01050_at AT1G01050 Symbols: AtPPa1, PPa1 | pyrophosphorylase 1 | chr1:31170-33153 REVERSE LENGTH=976
AT1G01060_at AT1G01060 Symbols: LHY, LHY1 | Homeodomain-like superfamily protein | chr1:33666-37840 REVERSE LENGTH=2704
AT1G01070_at AT1G01070 Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:38752-40944 REVERSE LENGTH=1311
AT1G01080_at AT1G01080 Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:45296-47019 REVERSE LENGTH=1319
AT1G01090_at AT1G01090 Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47485-49286 REVERSE LENGTH=1627
AT1G01100_at AT1G01100 Symbols: | 60S acidic ribosomal protein family | chr1:50090-51108 REVERSE LENGTH=587
AT1G01110_at AT1G01110 Symbols: IQD18 | IQ-domain 18 | chr1:52869-54685 FORWARD LENGTH=1439
AT1G01120_at AT1G01120 Symbols: KCS1 | 3-ketoacyl-CoA synthase 1 | chr1:57269-59167 REVERSE LENGTH=1899
AT1G01130_at AT1G01130 Symbols: | CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (InterPro:IPR020660), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 176 Blast hits to 176 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:61905-63811 REVERSE LENGTH=375
AT1G01140_at AT1G01140 Symbols: CIPK9, SnRK3.12, PKS6 | CBL-interacting protein kinase 9 | chr1:64166-67625 REVERSE LENGTH=1689
AT1G01150_at AT1G01150 Symbols: | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain | chr1:70115-72138 REVERSE LENGTH=1178
AT1G01160_at AT1G01160 Symbols: GIF2 | GRF1-interacting factor 2 | chr1:72339-74096 FORWARD LENGTH=1045
AT1G01170_at AT1G01170 Symbols: | Protein of unknown function (DUF1138) | chr1:73931-74737 REVERSE LENGTH=515
AT1G01190_at AT1G01190 Symbols: CYP78A8 | cytochrome P450, family 78, subfamily A, polypeptide 8 | chr1:83045-84864 REVERSE LENGTH=1608
AT1G01200_at AT1G01200 Symbols: ATRABA3, ATRAB-A3, RABA3 | RAB GTPase homolog A3 | chr1:86515-88213 REVERSE LENGTH=982
AT1G01220_at AT1G01220 Symbols: FKGP, AtFKGP | L-fucokinase/GDP-L-fucose pyrophosphorylase | chr1:91376-95651 FORWARD LENGTH=3532
AT1G01225_at AT1G01225 Symbols: | NC domain-containing protein-related | chr1:95987-97407 FORWARD LENGTH=1025

Total number of rows: 21492

Table truncated, full table size 3219 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL16112_ATH1121501_At_TAIRG.cdf.gz 5.5 Mb (ftp)(http) CDF

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