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Platform GPL16226 Query DataSets for GPL16226
Status Public on Nov 01, 2012
Title NimbleGen Arabidopsis thaliana 4x72K Array [080306_AT6_expr]
Technology type in situ oligonucleotide
Distribution commercial
Organism Arabidopsis thaliana
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description Gene Expression array
Design Name: 080306_AT6_expr
Design_ID: 7225

Format: 4x72K
Source: TAIR
Build: 6.0
Probe Length: 60mer
FEAT_TYPE: transcript

The Platform data table reflects a condensed, gene-level representation of the array.

NimbleGen description files linked below:
080306_AT6_expr.ndf
080306_AT6_expr.ngd
 
Submission date Oct 31, 2012
Last update date Nov 01, 2012
Contact name Simon Rasmussen
E-mail(s) simon@cbs.dtu.dk
Phone +45 4525 6148
Organization name Technical University of Denmark
Department Department of Systems Biology
Lab Center for Biological Sequence Analysis
Street address Kemitorvet, Building 208
City Kongens Lyngby
ZIP/Postal code DK-2800
Country Denmark
 
Samples (207) GSM1027678, GSM1027679, GSM1027680, GSM1027681, GSM1027682, GSM1027683 
Series (1)
GSE41935 Transcriptome responses to combined biotic and abiotic stresses in Arabidopsis thaliana

Data table header descriptions
ID Based on SEQ_ID from .ngd file
ORF Locus tag
CHROMOSOME
START
STOP
DESCRIPTION Transcript description

Data table
ID ORF CHROMOSOME START STOP DESCRIPTION
AT1G01010 AT1G01010 ExemplarFor 'AT1G01010'; gene_id 'N/A'; transcript_id 'AT1G01010'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01020 AT1G01020 ExemplarFor 'AT1G01020'; gene_id 'N/A'; transcript_id 'AT1G01020'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01030 AT1G01030 ExemplarFor 'AT1G01030'; gene_id 'N/A'; transcript_id 'AT1G01030'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01040 AT1G01040 ExemplarFor 'AT1G01040'; gene_id 'N/A'; transcript_id 'AT1G01040'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01050 AT1G01050 ExemplarFor 'AT1G01050'; gene_id 'N/A'; transcript_id 'AT1G01050'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01060 AT1G01060 ExemplarFor 'AT1G01060'; gene_id 'N/A'; transcript_id 'AT1G01060'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01070 AT1G01070 ExemplarFor 'AT1G01070'; gene_id 'N/A'; transcript_id 'AT1G01070'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01080 AT1G01080 ExemplarFor 'AT1G01080'; gene_id 'N/A'; transcript_id 'AT1G01080'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01090 AT1G01090 ExemplarFor 'AT1G01090'; gene_id 'N/A'; transcript_id 'AT1G01090'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01100 AT1G01100 ExemplarFor 'AT1G01100'; gene_id 'N/A'; transcript_id 'AT1G01100'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01110 AT1G01110 ExemplarFor 'AT1G01110'; gene_id 'N/A'; transcript_id 'AT1G01110'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01120 AT1G01120 ExemplarFor 'AT1G01120'; gene_id 'N/A'; transcript_id 'AT1G01120'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01130 AT1G01130 ExemplarFor 'AT1G01130'; gene_id 'N/A'; transcript_id 'AT1G01130'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01140 AT1G01140 ExemplarFor 'AT1G01140'; gene_id 'N/A'; transcript_id 'AT1G01140'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01150 AT1G01150 ExemplarFor 'AT1G01150'; gene_id 'N/A'; transcript_id 'AT1G01150'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01160 AT1G01160 ExemplarFor 'AT1G01160'; gene_id 'N/A'; transcript_id 'AT1G01160'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01170 AT1G01170 ExemplarFor 'AT1G01170'; gene_id 'N/A'; transcript_id 'AT1G01170'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01180 AT1G01180 ExemplarFor 'AT1G01180'; gene_id 'N/A'; transcript_id 'AT1G01180'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01190 AT1G01190 ExemplarFor 'AT1G01190'; gene_id 'N/A'; transcript_id 'AT1G01190'; gene_name 'N/A'; alt 'N/A'; N/A
AT1G01200 AT1G01200 ExemplarFor 'AT1G01200'; gene_id 'N/A'; transcript_id 'AT1G01200'; gene_name 'N/A'; alt 'N/A'; N/A

Total number of rows: 30380

Table truncated, full table size 4198 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL16226_080306_AT6_expr.ndf.gz 7.1 Mb (ftp)(http) NDF
GPL16226_080306_AT6_expr.ngd.gz 554.4 Kb (ftp)(http) NGD

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