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Platform GPL16245 Query DataSets for GPL16245
Status Public on Nov 05, 2012
Title [Gilmorea520187F] Affymetrix Custom Array - Gilmore SLARE E. faecalis
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Enterococcus faecalis
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Comment[ArrayExpressAccession] A-AFFY-84
affymetrix_netaffx tigr_cmr
Term Source File http://www.affymetrix.com/analysis/ http://www.tigr.org/tigr-scripts/CMR2/CMRHomePage.spl
 
Submission date Nov 05, 2012
Last update date Nov 13, 2013
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (28) GSM1030936, GSM1030937, GSM1030938, GSM1030939, GSM1030940, GSM1030941 
Series (2)
GSE42036 Expression data from E. faecalis Fsr mutants during GBAP induction
GSE52263 Expression Data from E. faecalis V583 under exposure to 10ug/ml vancomycin

Data table header descriptions
ID
ORF ORF Name
DESCRIPTION
SPOT_ID

Data table
ID ORF DESCRIPTION SPOT_ID
AFFX-18SRNAMur/X00686_3_at M. musculus GEN=18S rRNA DB_XREF=gb:X00686.1 NOTE=SIF corresponding to nucleotides 1321-1821 of gb:X00686.1 DEF=Mouse gene for 18S rRNA. AFFX-18SRNAMur/X00686_3_at
AFFX-18SRNAMur/X00686_5_at M. musculus GEN=18S rRNA DB_XREF=gb:X00686.1 NOTE=SIF corresponding to nucleotides 27-612 of gb:X00686.1 DEF=Mouse gene for 18S rRNA. AFFX-18SRNAMur/X00686_5_at
AFFX-18SRNAMur/X00686_M_at M. musculus GEN=18S rRNA DB_XREF=gb:X00686.1 NOTE=SIF corresponding to nucleotides 755-1227 of gb:X00686.1 DEF=Mouse gene for 18S rRNA. AFFX-18SRNAMur/X00686_M_at
AFFX-BioB-3_at E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioB-3_at
AFFX-BioB-5_at E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioB-5_at
AFFX-BioB-M_at E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioB-M_at
AFFX-BioC-3_at E. coli GEN=bioC DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioC-3_at
AFFX-BioC-5_at E. coli GEN=bioC DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioC-5_at
AFFX-BioDn-3_at E. coli GEN=bioD DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioDn-3_at
AFFX-BioDn-5_at E. coli GEN=bioD DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioDn-5_at
AFFX-CreX-3_at Bacteriophage P1 GEN=cre DB_XREF=gb:X03453.1 NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 DEF=Bacteriophage P1 cre gene for recombinase protein. AFFX-CreX-3_at
AFFX-CreX-5_at Bacteriophage P1 GEN=cre DB_XREF=gb:X03453.1 NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 DEF=Bacteriophage P1 cre gene for recombinase protein. AFFX-CreX-5_at
AFFX-DapX-3_at B. subtilis GEN=jojG DB_XREF=gb:L38424.1 NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds s. AFFX-DapX-3_at
AFFX-DapX-5_at B. subtilis GEN=dapB DB_XREF=gb:L38424.1 NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds s. AFFX-DapX-5_at
AFFX-DapX-M_at B. subtilis GEN=dapB, jojF DB_XREF=gb:L38424.1 NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1 DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds s. AFFX-DapX-M_at
AFFX-Dros-18S_rRNA_3_at D. melanogaster GEN=18S rRNA DB_XREF=gb:M21017.1 NOTE=SIF corresponding to nucleotides 1405-1983 of gb:M21017.1 DEF=D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5 end, clone pDm238. AFFX-Dros-18S_rRNA_3_at
AFFX-Dros-18S_rRNA_5_at D. melanogaster GEN=18S rRNA DB_XREF=gb:M21017.1 NOTE=SIF corresponding to nucleotides 59-575 of gb:M21017.1 DEF=D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5 end, clone pDm238. AFFX-Dros-18S_rRNA_5_at
AFFX-Dros-18S_rRNA_M_at D. melanogaster GEN=18S rRNA DB_XREF=gb:M21017.1 NOTE=SIF corresponding to nucleotides 710-1268 of gb:M21017.1 DEF=D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5 end, clone pDm238. AFFX-Dros-18S_rRNA_M_at
AFFX-Dros-ACTIN_3_at D. melanogaster GEN=Act42A DB_XREF=gb:AE003784.1 DB_XREF=fb:FBgn0000043 NOTE=SIF corresponding to nucleotides 60556-60113 of gb:AE003784.1 DEF=Drosophila melanogaster chromosome 2R, section 5 of 74 of the complete sequence. AFFX-Dros-ACTIN_3_at
AFFX-Dros-ACTIN_5_at D. melanogaster GEN=Act42A DB_XREF=gb:AE003784.1 DB_XREF=fb:FBgn0000043 NOTE=SIF corresponding to nucleotides 61185-61776 of gb:AE003784.1, not 100% identical DEF=Drosophila melanogaster chromosome 2R, section 5 of 74 of the complete sequence. AFFX-Dros-ACTIN_5_at

Total number of rows: 3693

Table truncated, full table size 205 Kbytes.




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Supplementary file Size Download File type/resource
GPL16245.adf.txt.gz 809.5 Kb (ftp)(http) TXT
GPL16245.compositesequences.txt.gz 20.4 Kb (ftp)(http) TXT
GPL16245.features.txt.gz 274.7 Kb (ftp)(http) TXT
GPL16245.reporters.txt.gz 244.7 Kb (ftp)(http) TXT
GPL16245_Gilmorea520187F.cdf.gz 1.3 Mb (ftp)(http) CDF

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