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Status
Public on Apr 05, 2013
Title
Affymetrix EUTOM3 tomato exon array [CDF: EUTOM3_exon]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Solanum lycopersicum Manufacturer
Affymetrix
Manufacture protocol
The included cdf file was build by mapping the 1,055,953 Affymetrix probes on the tomato genome (assembly 2.4) and then matched with the iTAG annotation v.2.3. The included probes_tab file contains the probe sequences and mapping to the iTAG v2.3 cDNA exons.
Description
The identifiers in the platform data table are for cDNA models which are publicly accessible at: http://solgenomics.net/
Submission date
Dec 06, 2012
Last update date
Apr 05, 2013
Contact name
Ruud A de Maagd
E-mail(s)
ruud.demaagd@wur.nl Organization name
Plant Resarch International
Street address
PO Box 619
City
Wageningen
ZIP/Postal code
NL-6700AP
Country
Netherlands
Samples (95)
GSM1049874 , GSM1049875 , GSM1049876 , GSM1049877 , GSM1049878 , GSM1049879
GSM1049880 ,
GSM1049881 ,
GSM1049882 ,
GSM1496241 ,
GSM1496242 ,
GSM1496243 ,
GSM1496244 ,
GSM1496245 ,
GSM1496246 ,
GSM1496247 ,
GSM1496248 ,
GSM1496249 ,
GSM1496250 ,
GSM1496251 ,
GSM1496252 ,
GSM1496253 ,
GSM1496254 ,
GSM1496255 ,
GSM1496256 ,
GSM1496257 ,
GSM1496258 ,
GSM1496259 ,
GSM1496260 ,
GSM1496261 ,
GSM1496262 ,
GSM1496263 ,
GSM1496264 ,
GSM1496265 ,
GSM1496266 ,
GSM1496267 ,
GSM1496268 ,
GSM1496269 ,
GSM1496270 ,
GSM1496271 ,
GSM1496272 ,
GSM1496273 ,
GSM1554496 ,
GSM1554497 ,
GSM1554498 ,
GSM1554499 ,
GSM1554500 ,
GSM1554501 ,
GSM1554502 ,
GSM1554503 ,
GSM1554504 ,
GSM1554505 ,
GSM1554506 ,
GSM1554507 ,
GSM1554508 ,
GSM1554509 ,
GSM1554510 ,
GSM1726205 ,
GSM1726206 ,
GSM1726207 ,
GSM1726208 ,
GSM1726209 ,
GSM1726210 ,
GSM1726211 ,
GSM1726212 ,
GSM1726213 ,
GSM1726214 ,
GSM1726215 ,
GSM1726216 ,
GSM1726217 ,
GSM1726218 ,
GSM1726219 ,
GSM1726220 ,
GSM1726221 ,
GSM1726222 ,
GSM1726223 ,
GSM1726224 ,
GSM5454547 ,
GSM5454548 ,
GSM5454549 ,
GSM5454550 ,
GSM5454551 ,
GSM5454552 ,
GSM5454553 ,
GSM5454554 ,
GSM5454555 ,
GSM5454556 ,
GSM5454557 ,
GSM5454558 ,
GSM7106679 ,
GSM7106680 ,
GSM7106681 ,
GSM7106682 ,
GSM7106683 ,
GSM7106684 Series (9)
GSE42783 Gene expression in three stages of ripening tomato fruit
GSE42784 Comparison of tomato fruit gene expression data obtained by microarray analysis and by treatment of degradome sequencing data as an RNAseq experiment
GSE61074 Whole genome tomato transcriptional response to Tetranychus urticae herbivory [Heinz1706]
GSE61075 Whole genome tomato transcriptional response to jasmonic acid treatment and Tetranychus urticae herbivory [def-1]
GSE61076 Whole genome tomato transcriptional response to Tetranychus urticae herbivory
GSE63637 Microarray analysis of developing fruits from transgenic lines with increased or reduced SlARF9 mRNA levels in tomato.
GSE70375 Whole genome tomato transcriptional response to tomato-adapted and non-adapted Tetranychus urticae herbivory
GSE180168 Exposure of meiosis-to-microspore-stage tomato flowers to long-term mild heat results in pollen failure after mitosis.
GSE227740 Whole genome tomato transcriptional response to Tetranychus evansi herbivory.
Data table header descriptions ID iTAG v2.3 cDNA ID
SPOT_ID solgenomics id
28672 840 Kbytes .Supplementary file Size Download File type/resource GPL16358_eutom3gene_v2_aprobes.cdf.gz
5.0 Mb
(ftp) (http) CDF
GPL16358_eutom3gene_v2_aprobes.cdf.txt.gz
5.4 Mb
(ftp) (http) TXT
GPL16358_probes_tab.txt.gz
17.1 Mb
(ftp) (http) TXT
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