GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Platform GPL16358 Query DataSets for GPL16358
Status Public on Apr 05, 2013
Title Affymetrix EUTOM3 tomato exon array [CDF: EUTOM3_exon]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Solanum lycopersicum
Manufacturer Affymetrix
Manufacture protocol The included cdf file was build by mapping the 1,055,953 Affymetrix probes on the tomato genome (assembly 2.4) and then matched with the iTAG annotation v.2.3. The included probes_tab file contains the probe sequences and mapping to the iTAG v2.3 cDNA exons.
Description The identifiers in the platform data table are for cDNA models which are publicly accessible at:

supplementary file: eutom3gene_v2_aprobes.cdf
supplementary file: probes_tab.txt
Submission date Dec 06, 2012
Last update date Apr 05, 2013
Contact name Ruud A de Maagd
Organization name Plant Resarch International
Street address PO Box 619
City Wageningen
ZIP/Postal code NL-6700AP
Country Netherlands
Samples (95) GSM1049874, GSM1049875, GSM1049876, GSM1049877, GSM1049878, GSM1049879 
Series (9)
GSE42783 Gene expression in three stages of ripening tomato fruit
GSE42784 Comparison of tomato fruit gene expression data obtained by microarray analysis and by treatment of degradome sequencing data as an RNAseq experiment
GSE61074 Whole genome tomato transcriptional response to Tetranychus urticae herbivory [Heinz1706]

Data table header descriptions
ID iTAG v2.3 cDNA ID
SPOT_ID solgenomics id

Data table
Solyc00g005000 Solyc00g005000
Solyc00g005040 Solyc00g005040
Solyc00g005050 Solyc00g005050
Solyc00g005100 Solyc00g005100
Solyc00g005110 Solyc00g005110
Solyc00g005150 Solyc00g005150
Solyc00g005440 Solyc00g005440
Solyc00g005450 Solyc00g005450
Solyc00g005460 Solyc00g005460
Solyc00g005470 Solyc00g005470
Solyc00g005480 Solyc00g005480
Solyc00g005840 Solyc00g005840
Solyc00g006480 Solyc00g006480
Solyc00g006490 Solyc00g006490
Solyc00g006500 Solyc00g006500
Solyc00g006510 Solyc00g006510
Solyc00g006520 Solyc00g006520
Solyc00g006530 Solyc00g006530
Solyc00g006540 Solyc00g006540
Solyc00g006550 Solyc00g006550

Total number of rows: 28672

Table truncated, full table size 840 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL16358_eutom3gene_v2_aprobes.cdf.gz 5.0 Mb (ftp)(http) CDF
GPL16358_eutom3gene_v2_aprobes.cdf.txt.gz 5.4 Mb (ftp)(http) TXT
GPL16358_probes_tab.txt.gz 17.1 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap