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Platform GPL16375 Query DataSets for GPL16375
Status Public on Dec 12, 2012
Title [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array - custom CDF ATH1121501_At_TAIRG_14.1.0)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Arabidopsis thaliana
Manufacturer Affymetrix
Manufacture protocol see manufacturer's website
 
 
Submission date Dec 12, 2012
Last update date Dec 12, 2012
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (6) GSM1052677, GSM1052678, GSM1052679, GSM1052680, GSM1052681, GSM1052682
Series (1)
GSE42875 ANGUSTIFOLIA 3 binds SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development

Data table header descriptions
ID
ORF
Description

Data table
ID ORF Description
AT1G01010_at AT1G01010 "Symbols: ANAC001, NAC001 | NAC domain containing protein 1 | chr1:3631-5899 FORWARD LENGTH=1688"
AT1G01030_at AT1G01030 Symbols: NGA3 | AP2/B3-like transcriptional factor family protein | chr1:11649-13714 REVERSE LENGTH=1905
AT1G01040_at AT1G01040 Symbols: DCL1 | dicer-like 1 | chr1:23416-31120 FORWARD LENGTH=5877
AT1G01050_at AT1G01050 "Symbols: AtPPa1, PPa1 | pyrophosphorylase 1 | chr1:31170-33153 REVERSE LENGTH=976"
AT1G01060_at AT1G01060 Symbols: LHY | Homeodomain-like superfamily protein | chr1:33967-37871 REVERSE LENGTH=2722
AT1G01070_at AT1G01070 Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:38752-40927 REVERSE LENGTH=1433
AT1G01080_at AT1G01080 Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:45296-47019 REVERSE LENGTH=1319
AT1G01090_at AT1G01090 Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47485-49286 REVERSE LENGTH=1627
AT1G01100_at AT1G01100 Symbols: | 60S acidic ribosomal protein family | chr1:50075-51199 REVERSE LENGTH=631
AT1G01110_at AT1G01110 Symbols: IQD18 | IQ-domain 18 | chr1:52239-54692 FORWARD LENGTH=1782
AT1G01120_at AT1G01120 Symbols: KCS1 | 3-ketoacyl-CoA synthase 1 | chr1:57269-59167 REVERSE LENGTH=1899
AT1G01130_at AT1G01130 "Symbols: | CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (InterPro:IPR020660), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 176 Blast hits to 176 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:61905-63811 REVERSE LENGTH=375"
AT1G01140_at AT1G01140 "Symbols: CIPK9, PKS6 | CBL-interacting protein kinase 9 | chr1:64167-67625 REVERSE LENGTH=1694"
AT1G01150_at AT1G01150 Symbols: | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain | chr1:70115-72138 REVERSE LENGTH=1178
AT1G01160_at AT1G01160 Symbols: GIF2 | GRF1-interacting factor 2 | chr1:72339-74096 FORWARD LENGTH=1045
AT1G01170_at AT1G01170 Symbols: | Protein of unknown function (DUF1138) | chr1:73931-74731 REVERSE LENGTH=503
AT1G01190_at AT1G01190 "Symbols: CYP78A8 | cytochrome P450, family 78, subfamily A, polypeptide 8 | chr1:83045-84864 REVERSE LENGTH=1608"
AT1G01200_at AT1G01200 "Symbols: ATRABA3, ATRAB-A3, RABA3 | RAB GTPase homolog A3 | chr1:86515-88213 REVERSE LENGTH=982"
AT1G01220_at AT1G01220 "Symbols: FKGP, AtFKGP | L-fucokinase/GDP-L-fucose pyrophosphorylase | chr1:91376-95651 FORWARD LENGTH=3532"
AT1G01225_at AT1G01225 Symbols: | NC domain-containing protein-related | chr1:95987-97407 FORWARD LENGTH=1025

Total number of rows: 21428

Table truncated, full table size 3204 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL16375_ATH1121501_At_TAIRG.cdf.gz 5.5 Mb (ftp)(http) CDF
GPL16375_ATH1121501_At_TAIRG_desc.txt.gz 702.6 Kb (ftp)(http) TXT
GPL16375_ATH1121501_At_TAIRG_mapping.txt.gz 1.7 Mb (ftp)(http) TXT
GPL16375_ATH1121501_At_TAIRG_probe_tab.txt.gz 3.0 Mb (ftp)(http) TXT

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