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Platform GPL16720 Query DataSets for GPL16720
Status Public on Mar 01, 2013
Title Affymetrix Maize Genome Array [CDF:SYNG007a520046]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Zea mays
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description custom microarray with 82,661 probe-sets and 1,322,551 probes.

The microarray platform was annotated by determining homology between probe sequences and the cDNA sequences for predicted transcripts from the filtered gene set of the 4a.53 release of the B73 genome using BLAST

annotations as described in http://dx.doi.org/10.1104/pp.112.213231

The identifiers (in the CLONE_ID column) are gene model IDs from the public maize genome sequencing project:
http://maizesequence.org
http://maizegdb.org/

SYNG007a520046.cdf
 
Submission date Feb 25, 2013
Last update date Mar 01, 2013
Contact name Gregory S Downs
Organization name University of Guelph
Street address 50 Stone Road E
City Guelph
ZIP/Postal code N1G2W1
Country Canada
 
Samples (150) GSM1090980, GSM1090981, GSM1090982, GSM1090983, GSM1090984, GSM1090985 
Series (1)
GSE44743 Expression data from Zea mays developmental series.

Data table header descriptions
ID probe_set_ID
CLONE_ID gene model reference
GO_annotation
SPOT_ID

Data table
ID CLONE_ID GO_annotation SPOT_ID
AB001385_at GRMZM2G106190 GO:0022900,GO:0005506,GO:0009055,GO:0051537,GO:0009507,GO:0006810
AB004882_at GO:0000160,GO:0000156,GO:0009735,GO:0006355 AB004882_at
AB007502_at AB007502_at
AB008464_at AB008464_at
AB012228_at AB012228_at
AB014475_at AB014475_at
AB016064_at AB016064_at
AB016801_at GO:0004707,GO:0006468,GO:0005524 AB016801_at
AB016802_at GO:0004707,GO:0006468,GO:0000746,GO:0007067,GO:0005524,GO:0051301 AB016802_at
AB016810_at AB016810_at
AB018587_s_at GRMZM2G429000 GO:0006869,GO:0016023
AB018589_at AB018589_at
AB018589_s_at GRMZM2G142705
AB018591_at GRMZM2G061695
AB018744_at AB018744_at
AB020961_s_at AB020961_s_at
AB021175_at AB021175_at
AB021176_at GRMZM2G146502 GO:0016023
AB024291_at GRMZM2G392101 GO:0000160,GO:0000156,GO:0009735,GO:0006355
AB024292_at GRMZM2G014154 GO:0016023,GO:0004871,GO:0000160

Total number of rows: 82662

Table truncated, full table size 2738 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL16720_SYNG007a520046.cdf.gz 19.9 Mb (ftp)(http) CDF
GPL16720_SYNG007a520046.cdf.txt.gz 7.8 Mb (ftp)(http) TXT
GPL16720_annotation.txt.gz 315.0 Kb (ftp)(http) TXT
GPL16720_probe_seq.txt.gz 18.7 Mb (ftp)(http) TXT

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