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Status
Public on Mar 01, 2013
Title
Affymetrix Maize Genome Array [CDF:SYNG007a520046]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Zea mays
Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
custom microarray with 82,661 probe-sets and 1,322,551 probes. The microarray platform was annotated by determining homology between probe sequences and the cDNA sequences for predicted transcripts from the filtered gene set of the 4a.53 release of the B73 genome using BLAST annotations as described in http://dx.doi.org/10.1104/pp.112.213231 The identifiers (in the CLONE_ID column) are gene model IDs from the public maize genome sequencing project:http://maizesequence.org http://maizegdb.org/ SYNG007a520046.cdf
Submission date
Feb 25, 2013
Last update date
Mar 01, 2013
Contact name
Gregory S Downs
Organization name
University of Guelph
Street address
50 Stone Road E
City
Guelph
ZIP/Postal code
N1G2W1
Country
Canada
Samples (150)
GSM1090980 , GSM1090981 , GSM1090982 , GSM1090983 , GSM1090984 , GSM1090985
GSM1090986 ,
GSM1090987 ,
GSM1090988 ,
GSM1090989 ,
GSM1090990 ,
GSM1090991 ,
GSM1090992 ,
GSM1090993 ,
GSM1090994 ,
GSM1090995 ,
GSM1090996 ,
GSM1090997 ,
GSM1090998 ,
GSM1090999 ,
GSM1091000 ,
GSM1091001 ,
GSM1091002 ,
GSM1091003 ,
GSM1091004 ,
GSM1091005 ,
GSM1091006 ,
GSM1091007 ,
GSM1091008 ,
GSM1091009 ,
GSM1091010 ,
GSM1091011 ,
GSM1091012 ,
GSM1091013 ,
GSM1091014 ,
GSM1091015 ,
GSM1091016 ,
GSM1091017 ,
GSM1091018 ,
GSM1091019 ,
GSM1091020 ,
GSM1091021 ,
GSM1091022 ,
GSM1091023 ,
GSM1091024 ,
GSM1091025 ,
GSM1091026 ,
GSM1091027 ,
GSM1091028 ,
GSM1091029 ,
GSM1091030 ,
GSM1091031 ,
GSM1091032 ,
GSM1091033 ,
GSM1091034 ,
GSM1091035 ,
GSM1091036 ,
GSM1091037 ,
GSM1091038 ,
GSM1091039 ,
GSM1091040 ,
GSM1091041 ,
GSM1091042 ,
GSM1091043 ,
GSM1091044 ,
GSM1091045 ,
GSM1091046 ,
GSM1091047 ,
GSM1091048 ,
GSM1091049 ,
GSM1091050 ,
GSM1091051 ,
GSM1091052 ,
GSM1091053 ,
GSM1091054 ,
GSM1091055 ,
GSM1091056 ,
GSM1091057 ,
GSM1091058 ,
GSM1091059 ,
GSM1091060 ,
GSM1091061 ,
GSM1091062 ,
GSM1091063 ,
GSM1091064 ,
GSM1091065 ,
GSM1091066 ,
GSM1091067 ,
GSM1091068 ,
GSM1091069 ,
GSM1091070 ,
GSM1091071 ,
GSM1091072 ,
GSM1091073 ,
GSM1091074 ,
GSM1091075 ,
GSM1091076 ,
GSM1091077 ,
GSM1091078 ,
GSM1091079 ,
GSM1091080 ,
GSM1091081 ,
GSM1091082 ,
GSM1091083 ,
GSM1091084 ,
GSM1091085 ,
GSM1091086 ,
GSM1091087 ,
GSM1091088 ,
GSM1091089 ,
GSM1091090 ,
GSM1091091 ,
GSM1091092 ,
GSM1091093 ,
GSM1091094 ,
GSM1091095 ,
GSM1091096 ,
GSM1091097 ,
GSM1091098 ,
GSM1091099 ,
GSM1091100 ,
GSM1091101 ,
GSM1091102 ,
GSM1091103 ,
GSM1091104 ,
GSM1091105 ,
GSM1091106 ,
GSM1091107 ,
GSM1091108 ,
GSM1091109 ,
GSM1091110 ,
GSM1091111 ,
GSM1091112 ,
GSM1091113 ,
GSM1091114 ,
GSM1091115 ,
GSM1091116 ,
GSM1091117 ,
GSM1091118 ,
GSM1091119 ,
GSM1091120 ,
GSM1091121 ,
GSM1091122 ,
GSM1091123 ,
GSM1091124 ,
GSM1091125 ,
GSM1091126 ,
GSM1091127 ,
GSM1091128 ,
GSM1091129
Series (1)
GSE44743
Expression data from Zea mays developmental series.
Data table header descriptions
ID
probe_set_ID
CLONE_ID
gene model reference
GO_annotation
SPOT_ID
Data table
ID
CLONE_ID
GO_annotation
SPOT_ID
AB001385_at
GRMZM2G106190
GO:0022900,GO:0005506,GO:0009055,GO:0051537,GO:0009507,GO:0006810
AB004882_at
GO:0000160,GO:0000156,GO:0009735,GO:0006355
AB004882_at
AB007502_at
AB007502_at
AB008464_at
AB008464_at
AB012228_at
AB012228_at
AB014475_at
AB014475_at
AB016064_at
AB016064_at
AB016801_at
GO:0004707,GO:0006468,GO:0005524
AB016801_at
AB016802_at
GO:0004707,GO:0006468,GO:0000746,GO:0007067,GO:0005524,GO:0051301
AB016802_at
AB016810_at
AB016810_at
AB018587_s_at
GRMZM2G429000
GO:0006869,GO:0016023
AB018589_at
AB018589_at
AB018589_s_at
GRMZM2G142705
AB018591_at
GRMZM2G061695
AB018744_at
AB018744_at
AB020961_s_at
AB020961_s_at
AB021175_at
AB021175_at
AB021176_at
GRMZM2G146502
GO:0016023
AB024291_at
GRMZM2G392101
GO:0000160,GO:0000156,GO:0009735,GO:0006355
AB024292_at
GRMZM2G014154
GO:0016023,GO:0004871,GO:0000160
Total number of rows: 82662 Table truncated, full table size 2738 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL16720_SYNG007a520046.cdf.gz
19.9 Mb
(ftp) (http)
CDF
GPL16720_SYNG007a520046.cdf.txt.gz
7.8 Mb
(ftp) (http)
TXT
GPL16720_annotation.txt.gz
315.0 Kb
(ftp) (http)
TXT
GPL16720_probe_seq.txt.gz
18.7 Mb
(ftp) (http)
TXT