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Platform GPL16727 Query DataSets for GPL16727
Status Public on Feb 28, 2013
Title [Blactisa520677F] Custom Affymetrix Bifidobacteria Genome Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Bifidobacterium longum; Bifidobacterium animalis subsp. lactis
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
 
Submission date Feb 27, 2013
Last update date Feb 28, 2013
Contact name Taylor S Oberg
E-mail(s) taylor.oberg@aggiemail.usu.edu
Organization name Utah State University
Department NDFS
Lab Broadbent
Street address 8700 Old Main
City Logan
State/province UT
ZIP/Postal code 84322
Country USA
 
Samples (24) GSM1089199, GSM1089200, GSM1089201, GSM1089202, GSM1089203, GSM1089204 
Series (1)
GSE44709 Expression data from Bifidobacterium longum strains exposed to hydrogen peroxide stress
Relations
Alternative to GPL16692

Data table header descriptions
ID
Identifier
GB_ACC
PT_GI
Identifier Source
Probe Set Name
ORF
SPOT_ID
Description
SPOT_ID

Data table
ID Identifier GB_ACC PT_GI Identifier Source Probe Set Name ORF SPOT_ID Description SPOT_ID
AFFX-Athal-25SrRNA_s_at X52320.1 X52320.1 GenBank AFFX-Athal-25SrRNA_s_at A. thaliana /GEN=25S rRNA /DB_XREF=gb:X52320.1 /NOTE=SIF corresponding to nucleotides 3668-3759 of gb:X52320.1 /DEF=Arabidopsis thaliana genes for 5.8S rRNA and 25S rRNA with 18S rRNA fragment.
AFFX-Athal-5SrRNA_at M65137.1 M65137.1 GenBank AFFX-Athal-5SrRNA_at A. thaliana /GEN=5S rRNA /DB_XREF=gb:M65137.1 /NOTE=SIF corresponding to nucleotides 29-468 of gb:M65137.1 /DEF=Arabidopsis thaliana 5S ribosomal RNA gene, complete cds.
AFFX-Athal-Actin_3_f_at U37281.1 U37281.1 GenBank AFFX-Athal-Actin_3_f_at A. thaliana /GEN=actin-2 /DB_XREF=gb:U37281.1 /NOTE=SIF corresponding to nucleotides 1036-1597 of gb:U37281.1 /DEF=Arabidopsis thaliana actin-2 mRNA, complete cds.
AFFX-Athal-Actin_5_r_at U37281.1 U37281.1 GenBank AFFX-Athal-Actin_5_r_at A. thaliana /GEN=actin-2 /DB_XREF=gb:U37281.1 /NOTE=SIF corresponding to nucleotides 8-329 of gb:U37281.1 /DEF=Arabidopsis thaliana actin-2 mRNA, complete cds.
AFFX-Athal-Actin_M_at U37281.1 U37281.1 GenBank AFFX-Athal-Actin_M_at A. thaliana /GEN=actin-2 /DB_XREF=gb:U37281.1 /NOTE=SIF corresponding to nucleotides 642-916 of gb:U37281.1 /DEF=Arabidopsis thaliana actin-2 mRNA, complete cds.
AFFX-Athal-GAPDH_3_s_at M64116.1 M64116.1 GenBank AFFX-Athal-GAPDH_3_s_at A. thaliana /GEN=GapC /DB_XREF=gb:M64116.1 /NOTE=SIF corresponding to nucleotides 1036-1241 of gb:M64116.1 /DEF=Arabidopsis thaliana glyceraldehyde 3-phosphate dehydrogenase C subunit (GapC) gene, complete cds.
AFFX-Athal-GAPDH_5_s_at M64116.1 M64116.1 GenBank AFFX-Athal-GAPDH_5_s_at A. thaliana /GEN=GapC /DB_XREF=gb:M64116.1 /NOTE=SIF corresponding to nucleotides 58-430 of gb:M64116.1 /DEF=Arabidopsis thaliana glyceraldehyde 3-phosphate dehydrogenase C subunit (GapC) gene, complete cds.
AFFX-Athal-GAPDH_M_s_at M64116.1 M64116.1 GenBank AFFX-Athal-GAPDH_M_s_at A. thaliana /GEN=GapC /DB_XREF=gb:M64116.1 /NOTE=SIF corresponding to nucleotides 488-775 of gb:M64116.1 /DEF=Arabidopsis thaliana glyceraldehyde 3-phosphate dehydrogenase C subunit (GapC) gene, complete cds.
AFFX-Athal-Ubq_3_f_at U84969.1 U84969.1 GenBank AFFX-Athal-Ubq_3_f_at A. thaliana /GEN=UBQ11 /DB_XREF=gb:U84969.1 /NOTE=SIF corresponding to nucleotides 767-1090 of gb:U84969.1 /DEF=Arabidopsis thaliana ubiquitin (UBQ11) gene, complete cds.
AFFX-Athal-Ubq_5_f_at U84969.1 U84969.1 GenBank AFFX-Athal-Ubq_5_f_at A. thaliana /GEN=UBQ11 /DB_XREF=gb:U84969.1 /NOTE=SIF corresponding to nucleotides 6-356 of gb:U84969.1 /DEF=Arabidopsis thaliana ubiquitin (UBQ11) gene, complete cds.
AFFX-Athal-Ubq_M_f_at U84969.1 U84969.1 GenBank AFFX-Athal-Ubq_M_f_at A. thaliana /GEN=UBQ11 /DB_XREF=gb:U84969.1 /NOTE=SIF corresponding to nucleotides 452-759 of gb:U84969.1 /DEF=Arabidopsis thaliana ubiquitin (UBQ11) gene, complete cds.
AFFX-BioB-3_at J04423.1 J04423.1 GenBank AFFX-BioB-3_at E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-BioB-5_at J04423.1 J04423.1 GenBank AFFX-BioB-5_at E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-BioB-M_at J04423.1 J04423.1 GenBank AFFX-BioB-M_at E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-BioC-3_at J04423.1 J04423.1 GenBank AFFX-BioC-3_at E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-BioC-5_at J04423.1 J04423.1 GenBank AFFX-BioC-5_at E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-BioDn-3_at J04423.1 J04423.1 GenBank AFFX-BioDn-3_at E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-BioDn-5_at J04423.1 J04423.1 GenBank AFFX-BioDn-5_at E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
AFFX-CreX-3_at X03453.1 X03453.1 GenBank AFFX-CreX-3_at Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein.
AFFX-CreX-5_at X03453.1 X03453.1 GenBank AFFX-CreX-5_at Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein.

Total number of rows: 5037

Table truncated, full table size 581 Kbytes.




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