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Platform GPL16745 Query DataSets for GPL16745
Status Public on Apr 11, 2013
Title NimbleGen Mouse lncRNA array [110815_MM9_AR_exp]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/
 
Description lncRNA Array designed based on known and novel lncRNAs assembled from RNA-seq reads from adult neurogenic brain regions

DESIGN_ID = 557241
Design Name: 110815_MM9_AR_exp

For the platform ID column, the identifiers from the 'SEQ_ID' were appended with those in the 'GENE_EXPR_OPTIONPROBE_ID' column to yield unique identifiers, which can be used to map back to the .pair files.
 
Submission date Mar 04, 2013
Last update date Jan 01, 2019
Contact name Abhinav Nellore
E-mail(s) abhinav.nellore@ucsf.edu
Phone 4439101925
Organization name UCSF
Street address 513 Parnassus Avenue
City San Francisco
State/province CA
ZIP/Postal code 94143-0794
Country USA
 
Samples (12) GSM1100722, GSM1100723, GSM1100724, GSM1100725, GSM1100726, GSM1100727 
Series (2)
GSE45281 Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo [lncRNA Array]
GSE45282 Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo

Data table header descriptions
ID
SEQ_ID
GENE_EXPR_OPTION
GB_ACC GenBank Accession number
CHROMOSOME
RANGE_GB
RANGE_START
RANGE_END
RANGE_STRAND
SPOT_ID

Data table
ID SEQ_ID GENE_EXPR_OPTION GB_ACC CHROMOSOME RANGE_GB RANGE_START RANGE_END RANGE_STRAND SPOT_ID
AK005028_CONTROL_SEQS AK005028 CONTROL_SEQS AK005028
AK010953_CONTROL_SEQS AK010953 CONTROL_SEQS AK010953
AK039117_CONTROL_SEQS AK039117 CONTROL_SEQS AK039117
AK128971_CONTROL_SEQS AK128971 CONTROL_SEQS AK128971
AK129421_CONTROL_SEQS AK129421 CONTROL_SEQS AK129421
AK140151_CONTROL_SEQS AK140151 CONTROL_SEQS AK140151
AK143943_CONTROL_SEQS AK143943 CONTROL_SEQS AK143943
AY971958_CONTROL_SEQS AY971958 CONTROL_SEQS AY971958
BC001994_CONTROL_SEQS BC001994 CONTROL_SEQS BC001994
BC003772_CONTROL_SEQS BC003772 CONTROL_SEQS BC003772
BC003833_CONTROL_SEQS BC003833 CONTROL_SEQS BC003833
BC007135_CONTROL_SEQS BC007135 CONTROL_SEQS BC007135
BC007466_CONTROL_SEQS BC007466 CONTROL_SEQS BC007466
BC011310_CONTROL_SEQS BC011310 CONTROL_SEQS BC011310
BC012966_CONTROL_SEQS BC012966 CONTROL_SEQS BC012966
BC016421_CONTROL_SEQS BC016421 CONTROL_SEQS BC016421
BC023729_CONTROL_SEQS BC023729 CONTROL_SEQS BC023729
BC023796_CONTROL_SEQS BC023796 CONTROL_SEQS BC023796
BC025073_CONTROL_SEQS BC025073 CONTROL_SEQS BC025073
BC028816_CONTROL_SEQS BC028816 CONTROL_SEQS BC028816

Total number of rows: 17664

Table truncated, full table size 2724 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL16745_110815_MM9_AR_exp.ndf.gz 9.4 Mb (ftp)(http) NDF
GPL16745_110815_MM9_AR_exp.ngd.gz 104.0 Kb (ftp)(http) NGD

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