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Platform GPL16765 Query DataSets for GPL16765
Status Public on Mar 12, 2013
Title Human 70-mer oligonucleotide microarray
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer CapitalBio Corporation,Bejing, China
Manufacture protocol A human genome 70-mer oligonucleotide microarray was obtained from CapitalBio Corporation (Beijing, China) Briefly, a human genome oligonucleotide set (version 4.0) consisting of 5’ amino acid-modified 70-mer probes and representing 25,100 well-characterized Homo sapiens genes was purchased from Operon. Then Oligonucleotides were dissolved in EasyArrayTM spotting solution (CapitalBio Corp) , and printed on PolymerSlide, in which the surface is covered by a thin layer of aldehyde group modified three-dimensional polymer chain (CapitalBio Corp.).
 
 
Submission date Mar 07, 2013
Last update date Mar 12, 2013
Contact name Ji Ma
E-mail(s) phd_jima@hotmail.com
Organization name Qilu Hospital, Shandong University
Department Department of Hematology
Lab Key Laboratory of Hematology
Street address West Wen Hua Road 107
City Jinan
State/province Shandong
ZIP/Postal code 250012
Country China
 
Samples (11) GSM1094296, GSM1094297, GSM1094298, GSM1110195, GSM1110196, GSM1115936 
Series (5)
GSE44948 Identification of thalidomide modulation related genes in mesenchymal stem cells
GSE45589 Transcriptomic analysis of SH-SY5Y cells in response to enterovirus type 71 infection
GSE45817 mRNA profiling in enterovirus type 71-infected SH-SY5Y cells after transfection with miR-1246 inhibitor

Data table header descriptions
ID
Block Block within array
Row Row within array
Column Column within array
Name
oligo_id
SEQUENCE
gene_id
transcript_id
ORF
description
SPOT_ID
chromosome
GB_LIST GenBank ID list
description_RefSeq
Riken_accessions
GB_accessions

Data table
ID Block Row Column Name oligo_id SEQUENCE gene_id transcript_id ORF description SPOT_ID chromosome GB_LIST description_RefSeq Riken_accessions GB_accessions
37009 1 1 1 H-ACTB housekeeping gene,positive control Control
37105 1 1 2 H-GAPD housekeeping gene,positive control Control
37153 1 1 3 H-LDHA housekeeping gene,positive control Control
37201 1 1 4 H-RPS9 housekeeping gene,positive control Control
37057 1 1 5 Hex spot and immobilization positive control Control
36481 1 1 6 50%DMSO hybridization negative control,spot solution Control
37249 1 1 7 Y1 Yeast intergenic sequence 1, spike RNA Control
37297 1 1 8 Y2 Yeast intergenic sequence 2, spike RNA Control
37345 1 1 9 Y3 Yeast intergenic sequence 3, spike RNA Control
37393 1 1 10 Y4 Yeast intergenic sequence 4, spike RNA Control
37441 1 1 11 Y5 Yeast intergenic sequence 5, spike RNA Control
37489 1 1 12 Y6 Yeast intergenic sequence 6, spike RNA Control
37537 1 1 13 Y7 Yeast intergenic sequence 7, spike RNA Control
37585 1 1 14 Y8 Yeast intergenic sequence 8, spike RNA Control
12 1 1 15 NDUFB7 H200000163 ATGTGATGCGCATGAAGGAGTTTGAGCGGGAGCGGAGGCTGCTCCAGCGGAAGAAGCGGCGGGAGAAGA ENSG00000099795 ENST00000215565 NDUFB7 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (EC 1.6.5.3) (EC 1.6.99.3) (NADHubiquinone oxidoreductase B18 subunit) (Complex IB18) (CIB18) (Cell adhesion protein SQM1). [Source:Uniprot/SWISSPROT;Acc:P17568] 19:1453789214543886 NM_004146 gb||HIT000290121;gb||HIT000267263;gb||HIT000074158;gb||HIT000031021;gb||HIT000001881;gb||HIT000195510 gi|33519471|gb|NM_004146.4|NM_004146
24 1 1 16 CSTF2 H200000170 GGGGAGGCACTTTACTTTCTGTAACTGGAGAGGTAGAGCCTAGAGGTTACTTGGGACCACCTCATCAGG ENSG00000101811 ENST00000372974;ENST00000372972 CSTF2 Cleavage stimulation factor 64 kDa subunit (CSTF 64 kDa subunit) (CF1 64 kDa subunit) (CstF64). [Source:Uniprot/SWISSPROT;Acc:P33240] X:9996200499982577 NM_001325 gb||HIT000296937;gb||HIT000293356;gb||HIT000282816;gb||HIT000277808;gb||HIT000273507;gb||HIT000273020;gb||HIT000266340;gb||HIT000196605;gb||HIT000092943;gb||HIT000038096;gb||HIT000020539 gi|75813621|gb|NM_001325.2|NM_001325
108 1 1 17 H200000203 TCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACATGCCAGCCACTGTGATAGAG NM_001511 gb||HIT000321309;gb||HIT000191173;gb||HIT000035578 gi|4504152|gb|NM_001511.1|NM_001511
120 1 1 18 HOXB7 H200000214 CTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGACTGTGGGTCTGGACTAACCCTGTGGTTG ENSG00000120087 ENST00000239165 HOXB7 Homeobox protein HoxB7 (Hox2C) (HHO.C1). [Source:Uniprot/SWISSPROT;Acc:P09629] 17:4403959644043378 NM_004502 gb||HIT000215660;gb||HIT000194485 gi|85068579|gb|NM_004502.3|NM_004502
204 1 1 19 GCNT2 H200000250 GGCTCTGCCTATGTGGCTCTATCAAGAGAGTTTGCCAACTTTGTTCTGCATGACCCACGGGCTGTTGAT ENSG00000111846 ENST00000379597;ENST00000316170;ENST00000265012 GCNT2 Nacetyllactosaminide beta1,6Nacetylglucosaminyltransferase (EC 2.4.1.150) (Nacetylglucosaminyltransferase) (Ibranching enzyme) (IGNT). [Source:Uniprot/SWISSPROT;Acc:Q06430] 6:1063657510737586 NM_001491 gb||HIT000326609;gb||HIT000265309;gb||HIT000265308;gb||HIT000254685;gb||HIT000192356;gb||HIT000079964;gb||HIT000079115;gb||HIT000079114 gi|30061504|gb|NM_001491.2|NM_001491
216 1 1 20 PDHB H200000259 CCAGGATCATGGAAGGTCCTGCGTTCAATTTCCTGGATGCTCCTGCTGTTCGTGTCACTGGTGCTGATG ENSG00000168291 ENST00000302746;ENST00000383714 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial precursor (EC 1.2.4.1) (PDHE1B). [Source:Uniprot/SWISSPROT;Acc:P11177] 3:5838839858394594 NM_000925 gb||HIT000322133;gb||HIT000304778;gb||HIT000298030;gb||HIT000297486;gb||HIT000296247;gb||HIT000291605;gb||HIT000284114;gb||HIT000283649;gb||HIT000276886;gb||HIT000276332;gb||HIT000275657;gb||HIT000275620;gb||HIT000274264;gb||HIT000273600;gb||HIT000270899;gb||HIT000268781;gb||HIT000195749;gb||HIT000195596;gb||HIT000195554;gb||HIT000195553;gb||HIT000191178;gb||HIT000086290;gb||HIT000030752;gb||HIT000029625;gb||HIT000024780;gb||HIT000275063 gi|4505686|gb|NM_000925.1|NM_000925

Total number of rows: 37632

Table truncated, full table size 15438 Kbytes.




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