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Platform GPL16897 Query DataSets for GPL16897
Status Public on Mar 29, 2013
Title JCVI_PFGRC_Campylobacter jejuni version 3_NCTC11168
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Campylobacter jejuni
Manufacturer J. Craig Venter Institute
Manufacture protocol see manufacturer's web site http://pfgrc.jcvi.org/index.php/microarray.html
 
Description This set includes the probes only for strain NCTC11168.
 
Submission date Mar 28, 2013
Last update date Mar 29, 2013
Contact name Zuo-Wei Wu
E-mail(s) wuzw@iastate.edu
Organization name Iowa state university
Street address 1113 Veterinary Medicine Bldg
City Ames
State/province IA
ZIP/Postal code 50011
Country USA
 
Samples (3) GSM1110338, GSM1110339, GSM1110340
Series (1)
GSE45601 Transcriptomic profiling of Campylobacter jejuni strains: IA3902 vs NCTC11168

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
Primary Strain The strain of primary target
ORF primary target link in Entrez Gene
Primary Target gene locus of NCTC11168 targeted by probes
Gene Symbol name of the gene targeted by probes
Common Name of Primary Target descrioption of the gene targeted by probes

Data table
ID SEQUENCE Primary Strain ORF Primary Target Gene Symbol Common Name of Primary Target
3QCJ00001_A_1 AATTTAACGATATCAATCTTTCTAATGATATTATAAACTATATCGCTACTTCTTTAGGGGATAATATAAG NCTC_11168 Cj0001 Cj0001 dnaA chromosomal replication initiation protein
3QCJ00010_E_19 TACTTATAGATGATGTACAGTTTTTAGGAAAAACCGATAAAATTCAAGAAGAATTTTTCTTTATATTTAA NCTC_11168 Cj0001 Cj0001 dnaA chromosomal replication initiation protein
3QCJ00010_E_21 AATTTTTTATTTGTAAGACAAAAAAGTACAAAATACAAACTTCCTATGTTTAATCATGAAGATTTTCCAA NCTC_11168 Cj0002 Cj0002 dnaN DNA polymerase III subunit beta
3QCJ00001_A_5 GCTATATGATAGAAAATTCAAATTTAGTTAAAGGAAATAATGAAGAATTATTTAGTGTAATCAAACAATT NCTC_11168 Cj0003 Cj0003 gyrB DNA gyrase subunit B
3QCJ00010_E_23 TAAAATCACGGGTGATGATGTGCGTGAAGGTTTGATCGCTATTGTGAGTGTAAAGGTACCTGAACCACAA NCTC_11168 Cj0003 Cj0003 gyrB DNA gyrase subunit B
3QCJ00001_O_23 GAAAAAATTTTAAATTATCTTGAAAAATATTATGGAGAAAAATACGATACAAGAAGAAGAATTCCTCTAG NCTC_11168 Cj0004c Cj0004c monohaem cytochrome C
3QCJ00001_A_2 AGAATCAATGCCTATAAGATCTGTAATTACTAATATCAAAAATGGTTCTGAAATAAAAGCAAATAAAAAA NCTC_11168 Cj0005c Cj0005c molydopterin containing oxidoreductase
3QCJ00016_J_16 AATAATGTAAGTGCATCTTTAAATGATGTTACAAATACTATGTATTTCGCTGCTATTTGTATGATAGCAG NCTC_11168 Cj0006 Cj0006 putative Na+/H+ antiporter family protein
3QCJ00010_G_1 AAAGGCTAAAGATATTTTAGAAAAATTCGATAAAAAAGACTTTTTTAAAGTCATGCCAAGAGATTATGAA NCTC_11168 Cj0007 Cj0007 gltB glutamate synthase (NADPH) large subunit
3QCJ00016_J_18 GCAATGGGTAAATGAAAAATGTAATGGAAATAGAAAGGAATTTTTAGGAAAACACTTAATTCCTGATGTT NCTC_11168 Cj0008 Cj0008 conserved hypothetical protein Cj0008
3QCJ00010_G_3 AAAAATTGCTCCTAAAGAAAGGATTTTAAATTACAAAGAATTTACTATACCTTTGGATAAAAAAGAACAA NCTC_11168 Cj0009 Cj0009 gltD glutamate synthase subunit beta
3QCJ00001_B_1 ACTTTATTTGACACAAAAGAACTTTTAAACGAATTTGATATAAATTTAATCGGTATTGATGAAGCAGGAC NCTC_11168 Cj0010c Cj0010c rnhB ribonuclease HII
3QCJ00010_G_5 GTAAAGATAGAGTGATGAATTTCTTAGCTAAAGACTTTCCTTGTTATGAATTTGAAAAAAACAAAGCCTA NCTC_11168 Cj0010c Cj0010c rnhB ribonuclease HII
3QCJ00001_B_23 GATCTTAAAAAAGTTAAAGGCATAGGTGATAAGCTTTTTGAAAAAATCAAAAATGATATCACAATAGAAT NCTC_11168 Cj0011c Cj0011c putative non-specific DNA binding protein. Functional classification-Synthesis and modification of macromolecules-DNA replication,restriction/modification, recombination and repair
3QCJ00016_J_20 TAAATATCAACACTGCAACACTAAAAGAATTAAAAAGTTTAAATGGTATTGGCGAAGCTAAAGCTAAAGC NCTC_11168 Cj0011c Cj0011c putative non-specific DNA binding protein. Functional classification-Synthesis and modification of macromolecules-DNA replication,restriction/modification, recombination and repair
3QCJ00001_A_7 TAAAAAAATGCTCGAAGAAGAAGAATTTTTTAATAGTGAAGTAGAAGAATTATGGGTTTGTGAAGTATGC NCTC_11168 Cj0012c Cj0012c rrc non-haem iron protein
3QCJ00016_J_22 AGTTGTTGTGGTGAAGAAATGAAATGTATCACTACAGATTTAACTGCAGTAAATTTAATGAAAGCTTTTG NCTC_11168 Cj0012c Cj0012c rrc non-haem iron protein
3QCJ00010_G_7 ATATTAAAGATTTAAATTTCATCTCAAGCAAAGTTGCACACATAGCAAAAATAGCCCCATCGCTAAATAG NCTC_11168 Cj0013 Cj0013 ilvD dihydroxy-acid dehydratase
3QCJ00001_A_9 AAAAATACTTTCAAAAGCGCTATACTTTAGCCTTTTTTATAGGTATATTAGCGGGTATTTTCGGAGCTAT NCTC_11168 Cj0014c Cj0014c putative integral membrane protein
3QCJ00016_J_24 CAATTTTTATAGTACATGTCGGTTTTTCTATTATTTTTGGAGTGGCTTATTGTATGATAGCGGAAAAATG NCTC_11168 Cj0014c Cj0014c putative integral membrane protein

Total number of rows: 2088

Table truncated, full table size 303 Kbytes.




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Supplementary file Size Download File type/resource
GPL16897_C_jejuni_3_NCTC_11168.gal.gz 540.9 Kb (ftp)(http) GAL

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