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Platform GPL16900 Query DataSets for GPL16900
Status Public on Aug 10, 2013
Title Agilent-034029 PanTro_HD_1M_1
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Pan troglodytes
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034029 or 2534029.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113470
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 PtCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 PanTro2_chr1:218799669-218799729 FALSE chr1:218799669-218799729 chr1 NC_006468.2 218799669 218799729
5 534 1816 PanTro2_chr2a:6779857-6779917 FALSE chr2a:6779857-6779917 chr2a NC_006469.2 6779857 6779917
6 534 1814 PanTro2_chr2a:59922450-59922507 FALSE chr2a:59922450-59922507 chr2a NC_006469.2 59922450 59922507
7 534 1812 PanTro2_chr1:182300862-182300910 FALSE chr1:182300862-182300910 chr1 NC_006468.2 182300862 182300910
8 534 1810 PanTro2_chr2a:41370937-41370988 FALSE chr2a:41370937-41370988 chr2a NC_006469.2 41370937 41370988
9 534 1808 PanTro2_chr1:128122376-128122436 FALSE chr1:128122376-128122436 chr1 NC_006468.2 128122376 128122436
10 534 1806 PanTro2_chr1:94481527-94481579 FALSE chr1:94481527-94481579 chr1 NC_006468.2 94481527 94481579
11 534 1804 PanTro2_chr1:132851716-132851765 FALSE chr1:132851716-132851765 chr1 NC_006468.2 132851716 132851765
12 534 1802 PanTro2_chr2a:68451399-68451444 FALSE chr2a:68451399-68451444 chr2a NC_006469.2 68451399 68451444
13 534 1800 PanTro2_chr1:184889627-184889672 FALSE chr1:184889627-184889672 chr1 NC_006468.2 184889627 184889672
14 534 1798 PanTro2_chr2a:58434761-58434821 FALSE chr2a:58434761-58434821 chr2a NC_006469.2 58434761 58434821
15 534 1796 PanTro2_chr1:106880550-106880597 FALSE chr1:106880550-106880597 chr1 NC_006468.2 106880550 106880597
16 534 1794 PanTro2_chr1:196434772-196434832 FALSE chr1:196434772-196434832 chr1 NC_006468.2 196434772 196434832
17 534 1792 PanTro2_chr1:137614412-137614470 FALSE chr1:137614412-137614470 chr1 NC_006468.2 137614412 137614470
18 534 1790 A_61_P11846861 FALSE NM_138569 C6orf142 ref|NM_138569 chr6:55241192-55241251 chr6 NC_006473.2 55241192 55241251
19 534 1788 PanTro2_chr2a:9528656-9528701 FALSE chr2a:9528656-9528701 chr2a NC_006469.2 9528656 9528701
20 534 1786 PanTro2_chr2a:65541284-65541344 FALSE chr2a:65541284-65541344 chr2a NC_006469.2 65541284 65541344

Total number of rows: 974016

Table truncated, full table size 111892 Kbytes.




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