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Platform GPL16904 Query DataSets for GPL16904
Status Public on Aug 10, 2013
Title Agilent-034033 PanTro2_HD_1M_5
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Pan troglodytes
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034033 or 2534033.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113474
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 PtCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 PanTro2_chr7:2089070-2089117 FALSE chr7:2089070-2089117 chr7 NC_006474.2 2089070 2089117
5 534 1816 PanTro2_chr8:115437910-115437955 FALSE chr8:115437910-115437955 chr8 NC_006475.2 115437910 115437955
6 534 1814 PanTro2_chr7:43019746-43019798 FALSE chr7:43019746-43019798 chr7 NC_006474.2 43019746 43019798
7 534 1812 PanTro2_chr8:40420552-40420603 FALSE chr8:40420552-40420603 chr8 NC_006475.2 40420552 40420603
8 534 1810 PanTro2_chr8:69173907-69173966 FALSE chr8:69173907-69173966 chr8 NC_006475.2 69173907 69173966
9 534 1808 PanTro2_chr7:104658679-104658735 FALSE chr7:104658679-104658735 chr7 NC_006474.2 104658679 104658735
10 534 1806 PanTro2_chr7:150667254-150667307 FALSE chr7:150667254-150667307 chr7 NC_006474.2 150667254 150667307
11 534 1804 PanTro2_chr8:47624242-47624297 FALSE chr8:47624242-47624297 chr8 NC_006475.2 47624242 47624297
12 534 1802 PanTro2_chr8:22515601-22515661 FALSE chr8:22515601-22515661 chr8 NC_006475.2 22515601 22515661
13 534 1800 PanTro2_chr8:105389404-105389450 FALSE chr8:105389404-105389450 chr8 NC_006475.2 105389404 105389450
14 534 1798 PanTro2_chr7:6494777-6494829 FALSE chr7:6494777-6494829 chr7 NC_006474.2 6494777 6494829
15 534 1796 PanTro2_chr8:122197384-122197444 FALSE chr8:122197384-122197444 chr8 NC_006475.2 122197384 122197444
16 534 1794 PanTro2_chr7:93639263-93639319 FALSE chr7:93639263-93639319 chr7 NC_006474.2 93639263 93639319
17 534 1792 PanTro2_chr7:16847449-16847509 FALSE chr7:16847449-16847509 chr7 NC_006474.2 16847449 16847509
18 534 1790 PanTro2_chr8:39928392-39928442 FALSE chr8:39928392-39928442 chr8 NC_006475.2 39928392 39928442
19 534 1788 PanTro2_chr8:94248430-94248486 FALSE chr8:94248430-94248486 chr8 NC_006475.2 94248430 94248486
20 534 1786 PanTro2_chr8:77598069-77598125 FALSE chr8:77598069-77598125 chr8 NC_006475.2 77598069 77598125

Total number of rows: 974016

Table truncated, full table size 110848 Kbytes.




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