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Platform GPL17049 Query DataSets for GPL17049
Status Public on Apr 08, 2014
Title UIUC Honey bee oligo 13K microarray v1
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Apis mellifera
Manufacturer University of Illinois
Manufacture protocol See manufacturer's webpage
 
 
Submission date Apr 22, 2013
Last update date Apr 08, 2014
Contact name WeiPing Chen
E-mail(s) weipingChen@niddk.nih.gov
Phone 301-496-0175
Organization name NIDDK/NIH
Department GCL
Lab Genomics Core Lab
Street address Bldg 8, Room 1A11, NIDDK/NIH
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (24) GSM1128047, GSM1128048, GSM1128049, GSM1128050, GSM1128051, GSM1128052 
Series (1)
GSE46278 Israeli acute paralysis virus – what we have learned about the virus since mysterious disappearance of the US honey bees known as Colony Collapse Disorder (CCD) in 2006

Data table header descriptions
ID UID
MetaRow
MetaColumn
Row
Column
Reporter Identifier
Reporter Name
Reporter BioSequence Database Entry [beebase] the beebase accession number (GB)
Reporter BioSequence Database Entry [entrez]
Reporter BioSequence Type
Reporter BioSequence PolymerType
SEQUENCE Reporter BioSequence [Actual Sequence]
Reporter Comment
Reporter Group [Role]
Reporter Control Type
GB_ACC GenBank Accession number
SPOT_ID

Data table
ID MetaRow MetaColumn Row Column Reporter Identifier Reporter Name Reporter BioSequence Database Entry [beebase] Reporter BioSequence Database Entry [entrez] Reporter BioSequence Type Reporter BioSequence PolymerType SEQUENCE Reporter Comment Reporter Group [Role] Reporter Control Type GB_ACC SPOT_ID
1 1 1 1 1 AM04933 GB12314-RA [PREDICTED: Apis mellifera similar to CG31534-PA, isoform A (LOC551558), mRNA] GB12314-RA XM_623950.2 ss_oligo DNA TCAAGAGCCAACCACCTGTAAATTATAGATCATCCATGCCGAATCTTCAGCTTCAGGACGTGCAAAGAA SET: OGS; Dmel Ortholog - C. Elsik Feb_2007: FBgn0051534; Best Dmel 5.1 match: FBgn0051534, blastp escore 4E-73; Experimental XM_623950.2
2 1 1 2 1 AM04933 GB12314-RA [PREDICTED: Apis mellifera similar to CG31534-PA, isoform A (LOC551558), mRNA] GB12314-RA XM_623950.2 ss_oligo DNA TCAAGAGCCAACCACCTGTAAATTATAGATCATCCATGCCGAATCTTCAGCTTCAGGACGTGCAAAGAA SET: OGS; Dmel Ortholog - C. Elsik Feb_2007: FBgn0051534; Best Dmel 5.1 match: FBgn0051534, blastp escore 4E-73; Experimental XM_623950.2
3 1 1 3 1 AM11258 GB18697-RA GB18697-RA ss_oligo DNA GATTGCGTTCCAAGTATTGCATGGATATATTGGCAAATATCTGTCGTCCCCAATACTGTACCACCGTGC SET: OGS; Best Dmel 5.1 match: FBgn0053196, blastp escore 7E-05; Experimental GB18697-RA
4 1 1 4 1 AM11258 GB18697-RA GB18697-RA ss_oligo DNA GATTGCGTTCCAAGTATTGCATGGATATATTGGCAAATATCTGTCGTCCCCAATACTGTACCACCGTGC SET: OGS; Best Dmel 5.1 match: FBgn0053196, blastp escore 7E-05; Experimental GB18697-RA
5 1 1 5 1 AM11240 GB18679-RA [PREDICTED: Apis mellifera similar to armadillo repeat containing 3 (LOC725288), mRNA] GB18679-RA XM_001121156.1 ss_oligo DNA TTTTTCCAACAAAGCTGCTGAAACCGAACTTCATTGTCGATCTGATGGATTGCCCTGGAGACTTGATTC SET: OGS; Dmel Ortholog - C. Elsik Feb_2007: FBgn0033794; Best Dmel 5.1 match: FBgn0033794, blastp escore 1E-14; Experimental XM_001121156.1
6 1 1 6 1 AM11240 GB18679-RA [PREDICTED: Apis mellifera similar to armadillo repeat containing 3 (LOC725288), mRNA] GB18679-RA XM_001121156.1 ss_oligo DNA TTTTTCCAACAAAGCTGCTGAAACCGAACTTCATTGTCGATCTGATGGATTGCCCTGGAGACTTGATTC SET: OGS; Dmel Ortholog - C. Elsik Feb_2007: FBgn0033794; Best Dmel 5.1 match: FBgn0033794, blastp escore 1E-14; Experimental XM_001121156.1
7 1 1 7 1 AM05804 GB13196-RA [PREDICTED: Apis mellifera similar to CG13654-PA (LOC551619), partial mRNA] GB13196-RA XM_624010.2 ss_oligo DNA AGGTGGATGTTCAGCTCGAAATGTCTCTATATTTTTGAAATCTGGCAGTCTACCATTCGTACGACCTGA SET: OGS; Dmel Ortholog - C. Elsik Feb_2007: FBgn0039290; Best Dmel 5.1 match: FBgn0039290, blastp escore 3E-22; Experimental XM_624010.2
8 1 1 8 1 AM05804 GB13196-RA [PREDICTED: Apis mellifera similar to CG13654-PA (LOC551619), partial mRNA] GB13196-RA XM_624010.2 ss_oligo DNA AGGTGGATGTTCAGCTCGAAATGTCTCTATATTTTTGAAATCTGGCAGTCTACCATTCGTACGACCTGA SET: OGS; Dmel Ortholog - C. Elsik Feb_2007: FBgn0039290; Best Dmel 5.1 match: FBgn0039290, blastp escore 3E-22; Experimental XM_624010.2
9 1 1 9 1 AM05866 GB13259-RA GB13259-RA ss_oligo DNA GGTGAACTTAGTGCTTATTCTGTATTTAATCCAAACTGTAAAGCTATTGAGGGAACACTTGATGCTTCA SET: OGS; Dmel Ortholog - C. Elsik Feb_2007: FBgn0039291; Best Dmel 5.1 match: FBgn0039291, blastp escore 5E-26; Experimental GB13259-RA
10 1 1 10 1 AM05866 GB13259-RA GB13259-RA ss_oligo DNA GGTGAACTTAGTGCTTATTCTGTATTTAATCCAAACTGTAAAGCTATTGAGGGAACACTTGATGCTTCA SET: OGS; Dmel Ortholog - C. Elsik Feb_2007: FBgn0039291; Best Dmel 5.1 match: FBgn0039291, blastp escore 5E-26; Experimental GB13259-RA
11 1 1 11 1 AM03683 GB11059-RA [PREDICTED: Apis mellifera similar to Retinoid- and fatty-acid binding protein CG11064-PA, transcript variant 1 (LOC408961), mRNA] GB11059-RA XM_392490.3 ss_oligo DNA AAAATATATCGTGATTTGGGACTCACCTATTACCACGTGTCGTATCCGAAAGAGCTTCTCGTCTCGGGC SET: OGS; Dmel Ortholog - C. Elsik Feb_2007: FBgn0016724; Best Dmel 5.1 match: FBgn0016724, blastp escore 2E-151; Experimental XM_392490.3
12 1 1 12 1 AM03683 GB11059-RA [PREDICTED: Apis mellifera similar to Retinoid- and fatty-acid binding protein CG11064-PA, transcript variant 1 (LOC408961), mRNA] GB11059-RA XM_392490.3 ss_oligo DNA AAAATATATCGTGATTTGGGACTCACCTATTACCACGTGTCGTATCCGAAAGAGCTTCTCGTCTCGGGC SET: OGS; Dmel Ortholog - C. Elsik Feb_2007: FBgn0016724; Best Dmel 5.1 match: FBgn0016724, blastp escore 2E-151; Experimental XM_392490.3
13 1 1 13 1 AM07894 GB15304-RA [PREDICTED: Apis mellifera similar to CG13349-PA, isoform A (LOC413299), mRNA] GB15304-RA XM_396744.3 ss_oligo DNA GAAACATTGAAGAATTCGTCACTGCCCTCGAGTCAGAAGCTAAAAGTGGCCAAGAACAAACACAGCAAG SET: OGS; Dmel Ortholog - C. Elsik Feb_2007: FBgn0033886; Best Dmel 5.1 match: FBgn0033886, blastp escore 1E-83; Experimental XM_396744.3
14 1 1 14 1 AM07894 GB15304-RA [PREDICTED: Apis mellifera similar to CG13349-PA, isoform A (LOC413299), mRNA] GB15304-RA XM_396744.3 ss_oligo DNA GAAACATTGAAGAATTCGTCACTGCCCTCGAGTCAGAAGCTAAAAGTGGCCAAGAACAAACACAGCAAG SET: OGS; Dmel Ortholog - C. Elsik Feb_2007: FBgn0033886; Best Dmel 5.1 match: FBgn0033886, blastp escore 1E-83; Experimental XM_396744.3
15 1 1 15 1 AM05424 GB12809-RA [PREDICTED: Apis mellifera similar to Actin-5C (LOC725739), partial mRNA] GB12809-RA XM_001121551.1 ss_oligo DNA CAATTATGAAATGCGATGTTGATATTCGTAAGGATTTGTATGCGAATTCAGTTCTATCGGGCGGTACCA SET: OGS; Also matches: GB12453-RA,XM_625012.1; Best Dmel 5.1 match: FBgn0000042, blastp escore 2E-71; Experimental XM_001121551.1
16 1 1 16 1 AM05424 GB12809-RA [PREDICTED: Apis mellifera similar to Actin-5C (LOC725739), partial mRNA] GB12809-RA XM_001121551.1 ss_oligo DNA CAATTATGAAATGCGATGTTGATATTCGTAAGGATTTGTATGCGAATTCAGTTCTATCGGGCGGTACCA SET: OGS; Also matches: GB12453-RA,XM_625012.1; Best Dmel 5.1 match: FBgn0000042, blastp escore 2E-71; Experimental XM_001121551.1
17 1 1 17 1 AM05895 GB13288-RA [PREDICTED: Apis mellifera similar to R04B5.5 (LOC727240), partial mRNA] GB13288-RA XM_001122950.1 ss_oligo DNA AATTGGTCTGCTTGCTATGCTTTGTGCCAAGGCAATGGGGGCGAGTTCTATTACCGTTTTAGATATTAA SET: OGS; Best Dmel 5.1 match: FBgn0022359, blastp escore 5E-33; Experimental XM_001122950.1
18 1 1 18 1 AM05895 GB13288-RA [PREDICTED: Apis mellifera similar to R04B5.5 (LOC727240), partial mRNA] GB13288-RA XM_001122950.1 ss_oligo DNA AATTGGTCTGCTTGCTATGCTTTGTGCCAAGGCAATGGGGGCGAGTTCTATTACCGTTTTAGATATTAA SET: OGS; Best Dmel 5.1 match: FBgn0022359, blastp escore 5E-33; Experimental XM_001122950.1
19 1 1 19 1 AM01172 DB762253 RIKEN full-length enriched honey bee cDNA library, head Apis mellifera cDNA clone BH10026H19 3', mRNA sequence DB762253 ss_oligo DNA CGAATGGTGTAAAGTGCGTTAACGAGCAAGTTTTGAATGTAATCGGTGCTTAAAATATGGCAAGCTCAC SET: UI_EST BI504056; Experimental DB762253
20 1 1 20 1 AM01172 DB762253 RIKEN full-length enriched honey bee cDNA library, head Apis mellifera cDNA clone BH10026H19 3', mRNA sequence DB762253 ss_oligo DNA CGAATGGTGTAAAGTGCGTTAACGAGCAAGTTTTGAATGTAATCGGTGCTTAAAATATGGCAAGCTCAC SET: UI_EST BI504056; Experimental DB762253

Total number of rows: 28800

Table truncated, full table size 8571 Kbytes.




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