NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL17056 Query DataSets for GPL17056
Status Public on Apr 24, 2013
Title FDMC Populus euphratica cDNA microarray slide
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Populus euphratica
Manufacturer Finnish DNA Microarray Centre
Manufacture protocol http://www.schott.com/nexterion/english/download/protocol_hisens_e_dna_2_0.pdf
 
Description The creation of P. euphratica EST collection is described in Brosché et al. (Genome Biol. 6 (2005) R101). The PCR-amplified fragments originated from EST were spotted on Schott Nexterion E type epoxy-coated slides. The array consists of 3 replicates (4 x 2 arrays per replicate), spacing between replicates spots 8464. The grid of spots is 190 um x 190 um, and one subarray consists of 46 x 23 spots. The grid between subarrays is 9 mm x 4.5 mm.
 
Submission date Apr 23, 2013
Last update date Apr 24, 2013
Contact name Suvi Tuulia Sutela
E-mail(s) suvi.sutela@oulu.fi
Organization name University of Oulu
Department Biology
Street address P.O. Box 3000
City Oulu
ZIP/Postal code 90014
Country Finland
 
Samples (18) GSM1128676, GSM1128677, GSM1128678, GSM1128679, GSM1128680, GSM1128681 
Series (1)
GSE46331 24-hour herbivory exposure of VHb-expressing Populus tremula x Populus tremuloides

Data table header descriptions
ID
Block Block number (1-24)
Row Row number (1-23)
Column Column number (1-46)
GB_ACC GenBank accession
Name Spotting plate
cDNA_clone Populus euphratica cDNA clone
SPOT_ID

Data table
ID Block Row Column GB_ACC Name cDNA_clone SPOT_ID
1 1 1 1 AJ767390 *R040_1A1* P0000100005E12
2 1 1 2 AJ767659 *R040_1A2* P0000100008G10
3 1 1 3 AJ768206 *R040_1A5* P0000100015C05
4 1 1 4 AJ768319 *R040_1A6* P0000100016E08
5 1 1 5 AJ768987 *R040_1A9* P0000100024A11
6 1 1 6 AJ769278 *R040_1A10* P0000100028B04
7 1 1 7 AJ776752 *R040_1A13* P0000400018A01
8 1 1 8 AJ777037 *R040_1A14* P0000400022B08
9 1 1 9 AJ777674 *R040_1A17* P0000400033D12
10 1 1 10 AJ777938 *R040_1A18* P0000400037B10
11 1 1 11 AJ778716 *R040_1A21* P0000600005B02
12 1 1 12 AJ778967 *R040_1A22* P0000600009B10
13 1 1 13 AJ767519 *R040_1E1* P0000100007B05
14 1 1 14 AJ767703 *R040_1E2* P0000100009C10
15 1 1 15 AJ768251 *R040_1E5* P0000100015G07
16 1 1 16 AJ768407 *R040_1E6* P0000100017E05
17 1 1 17 AJ769180 *R040_1E9* P0000100026B11
18 1 1 18 AJ769362 *R040_1E10* P0000100030B10
19 1 1 19 AJ776901 *R040_1E13* P0000400020B02
20 1 1 20 AJ777128 *R040_1E14* P0000400023D10

Total number of rows: 25392

Table truncated, full table size 1269 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap