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Platform GPL17150 Query DataSets for GPL17150
Status Public on May 15, 2013
Title NimbleGen Sus scrofa 2.1M CGH array [120529_Sscr_10_2_WG_JH_CGH_HX1]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Sus scrofa
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description Annotation in this record based on NCBI Sscrofa 10.2
2.1M probes in total
 
Submission date May 11, 2013
Last update date May 15, 2013
Contact name Huimin Kang
E-mail(s) nongdaxiaokang@126.com
Phone 18810882762
Organization name China Agriculture University
Street address Beijing
City Beijing
State/province Beijing
ZIP/Postal code 100193
Country China
 
Samples (12) GSM1139107, GSM1139108, GSM1139109, GSM1139110, GSM1139111, GSM1139112 
Series (1)
GSE46847 CGH analyses for the Chinese indigenous pig breeds and commercial pig breeds

Data table header descriptions
ID
Chromosome
RANGE_GB Chromosome GenBank Accession number.version
SPOT_ID
RANGE_START
RANGE_END
SEQUENCE

Data table
ID Chromosome RANGE_GB SPOT_ID RANGE_START RANGE_END SEQUENCE
CHR01FS000000801 chr1 NC_010443.4 801 850 TTGATTTCGAGCCTCATAGCGTTGGGTTCATACAAGCCGTGGGACAGGAT
CHR01FS000003629 chr1 NC_010443.4 3629 3678 CTTTAGCCCGACTGTTACATGGGGCCAAACGCGTCCTTGAAACCAAGACA
CHR01FS000006139 chr1 NC_010443.4 6139 6188 GCTGTGGTTTAGGCCAGCTGCCAAAGCTCCGATCAATCGATGGATCGTTT
CHR01FS000008239 chr1 NC_010443.4 8239 8288 AATGCCAAGCTGCCCTACATAGTGCGTTCTCATAAGCCGAATAACCTCCC
CHR01FS000009689 chr1 NC_010443.4 9689 9738 GTTCTGCAATGGACAGCATATGCTTTGGAGTGAAAGGCAGTGGCTCTTTG
CHR01FS000012839 chr1 NC_010443.4 12839 12888 CGATTTTATCCGTTTCACATCCCCAATTGCGAAGGAGCTACTATGCCCAC
CHR01FS000014839 chr1 NC_010443.4 14839 14888 CCTGGGAACACAGCCTGTTTCACCTAGCTGAGGAGATCCGGGTCTGGGAA
CHR01FS000016620 chr1 NC_010443.4 16620 16669 AGGGAACTGCGGTGGCAGAAGTCCAAGATCTGGGCCTCCTCCTGCCTGAG
CHR01FS000023020 chr1 NC_010443.4 23020 23074 GGACAGAAGTAAGGGAGGAGAAGACAAAATATTCTCTTACCTTATGTGAAAGAAC
CHR01FS000024570 chr1 NC_010443.4 24570 24619 ATTTTTGACTGACTTTCGACTTCTGAGGGCCTCATCCTTGGCATCGGGAG
CHR01FS000026470 chr1 NC_010443.4 26470 26526 TGTGCCGGCCATTCCAAAGCATAGTAAAGATCGAGGGAAGAATTTCCAATTTGAAAA
CHR01FS000028920 chr1 NC_010443.4 28920 28969 ATAAGAAGAGGTGTGTCCACATTGAGGGTGAGGGCTGAAATACATGTGCA
CHR01FS000032320 chr1 NC_010443.4 32320 32369 TGCCTTTTGATGGCATCAGTCGGCCCCGGAACAATTCAGGTGGTCATTGA
CHR01FS000033620 chr1 NC_010443.4 33620 33669 TCCTTTCTCGGCCTTGAACAATGCCTTCTTCTGGACCTCCAGGTGTTCTG
CHR01FS000034920 chr1 NC_010443.4 34920 34969 TTCTGCCGCAGGGCTTGCGGTGGTGGTGCCCTGGAACTGAACCTGAGAAG
CHR01FS000038476 chr1 NC_010443.4 38476 38530 CTGAATCCTACTACCTGTTAGGTAATGTAAGTTCCTTTGCCTACCGTTCTATATA
CHR01FS000042191 chr1 NC_010443.4 42191 42240 TGCAGCCAGGCCTCCACACTGAACCTGCACTCTAGACATGGCAGCTTCCA
CHR01FS000043091 chr1 NC_010443.4 43091 43140 CCTCCTGCGCTACGGCCCTCCCCGGCCCTGGCTGACATGGGTCCTTTCCT
CHR01FS000043791 chr1 NC_010443.4 43791 43840 GTGTCAAAGGCCTCCTGGGAACACAGCTTGTCCAGGTAGCTGAAGAGATC
CHR01FS000045091 chr1 NC_010443.4 45091 45140 GCATGAGACAGGGCCCAGCACTGGCTGGTGTGGGGATCCTACCCTTAGAG

Total number of rows: 2167769

Table truncated, full table size 231731 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL17150_120529_Sscr_10_2_WG_JH_CGH_HX1.ndf.gz 121.3 Mb (ftp)(http) NDF
GPL17150_120529_Sscr_10_2_WG_JH_CGH_HX1.pos.gz 17.1 Mb (ftp)(http) POS
GPL17150_OID39054_Sus_scrofa_10_2_probe_locations.gff.gz 15.4 Mb (ftp)(http) GFF
GPL17150_OID39054_Sus_scrofa_10_2_probes.txt.gz 91.6 Mb (ftp)(http) TXT
GPL17150_OID39054_Sus_scrofa_10_2_stats.txt.gz 810 b (ftp)(http) TXT

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