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| Status |
Public on Aug 12, 2013 |
| Title |
NimbleGen 12x270K Custom Maize Methylation Array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Zea mays |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
see http://www.nimblegen.com/technology/manufacture.html
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| |
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| Description |
B73 RefGen_v2 (order ID#: OID40141)
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| Submission date |
May 21, 2013 |
| Last update date |
Aug 14, 2013 |
| Contact name |
Steve R Eichten |
| E-mail(s) |
eicht021@umn.edu
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| Organization name |
University of Minnesota
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| Department |
Plant Biology
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| Lab |
Springer Lab
|
| Street address |
1445 Gortner Ave
|
| City |
St. Paul |
| State/province |
MN |
| ZIP/Postal code |
55108 |
| Country |
USA |
| |
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| Samples (106)
|
GSM1145442, GSM1145443, GSM1145444, GSM1145445, GSM1145446, GSM1145447
GSM1145448, GSM1145449, GSM1145450, GSM1145451, GSM1145452, GSM1145453, GSM1145454, GSM1145455, GSM1145456, GSM1145457, GSM1145458, GSM1145459, GSM1145460, GSM1145461, GSM1145462, GSM1145463, GSM1145464, GSM1145465, GSM1145466, GSM1145467, GSM1145468, GSM1145469, GSM1145470, GSM1145471, GSM1145472, GSM1145473, GSM1145474, GSM1145475, GSM1145476, GSM1248504, GSM1248505, GSM1248506, GSM1248507, GSM1248508, GSM1248509, GSM1248510, GSM1248511, GSM1248512, GSM1248513, GSM1248514, GSM1248515, GSM1248516, GSM1248517, GSM1248518, GSM1248519, GSM1248520, GSM1248521, GSM1248522, GSM1248523, GSM1248524, GSM1248525, GSM1248526, GSM1248527, GSM1248528, GSM1248529, GSM1248530, GSM1248531, GSM1248532, GSM1248533, GSM1248534, GSM1248535, GSM1248536, GSM1248537, GSM1248538, GSM1248539, GSM1248540, GSM1248541, GSM1248542, GSM1248543, GSM1248544, GSM1248545, GSM1248546, GSM1248547, GSM1248548, GSM1248549, GSM1248550, GSM1248551, GSM1248552, GSM1248553, GSM1248554, GSM1248555, GSM1248556, GSM1248557, GSM1248558, GSM1248559, GSM1248560, GSM1248561, GSM1248562, GSM1248563, GSM1248564, GSM1248565, GSM1248566, GSM1248567, GSM1248568, GSM1248569, GSM1248570, GSM1248571, GSM1248572, GSM1248573, GSM1248574
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| Series (2) |
| GSE46949 |
Epigenetic and genetic influences on DNA methylation variation in maize populations |
| GSE51567 |
Inheritance patterns and stability of DNA methylation variation in maize near-isogenic lines |
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| Data table header descriptions |
| ID |
This is based on the FEATURE_ID column of the .ndf file. |
| X |
An integer that indicates the X coordinate of the probe on the image. |
| Y |
An integer that indicates the Y coordinate of the probe on the image. |
| CHROMOSOME |
Chromosomal position of feature based on B73 RefGen_v2 annotation. |
| RANGE_START |
Starting physical position (bp) of feature based on B73 RefGen_v2 annotation. |
| RANGE_END |
Stop physical position (bp) of feature based on B73 RefGen_v2 annotation. |
| SEQUENCE |
The nucleotide sequence of each probe. |
| PROBE_LENGTH |
The length in bp of each probe sequence. |
| SPOT_ID |
Inidividual probe identifcation values named as 'CHR<chromosome number><chromosome start position>. |
| Data table |
| ID |
X |
Y |
CHROMOSOME |
RANGE_START |
RANGE_END |
SEQUENCE |
PROBE_LENGTH |
SPOT_ID |
| 15969637 |
456 |
414 |
10 |
4466070 |
4466120 |
CCGCGGCAAAGACATCTAACGGCCAACGCCCATGGCAAGAGATAAGATCA |
50 |
CHR10FS004466070 |
| 15969638 |
349 |
446 |
10 |
5903355 |
5903408 |
GACACAGGACGAAATTGGTGTTTTAAGAAGCAGAGAAATCGAATGTTTTGGGC |
53 |
CHR10FS005903355 |
| 15969639 |
73 |
409 |
10 |
5908200 |
5908250 |
GCCGGCCATAACAGATTCATACCTCCACAGCCGTTACACAAGCTTCGATT |
50 |
CHR10FS005908200 |
| 15969640 |
241 |
212 |
10 |
10616911 |
10616961 |
TGTCGCCCACCAGAAGGAAGACGAACAGATTCCCGCGAAATGTCGATCTC |
50 |
CHR10FS010616911 |
| 15969641 |
184 |
286 |
10 |
14198475 |
14198525 |
ACGACGAGTCCACCGCAAGCTAGATGCAACTGGGCCCGAGTTCCTCCCCT |
50 |
CHR10FS014198475 |
| 15969642 |
305 |
565 |
10 |
14202498 |
14202555 |
ACAGAAACAATGGATCAGATAGCGAATACTGCCTAGATTGTCAATTGCTCTGGTCTA |
57 |
CHR10FS014202498 |
| 15969643 |
447 |
149 |
10 |
57700773 |
57700823 |
TCCTCAAGCTCAAGCCCATCAAACTCATCATCCAGGTCCTCATGCTGCCC |
50 |
CHR10FS057700773 |
| 15969644 |
157 |
460 |
10 |
73662397 |
73662447 |
AAGGATGTTACCGACAAACGAGATCGCGACGAGGGAGTGGGGATAGGCTC |
50 |
CHR10FS073662397 |
| 15969645 |
189 |
42 |
10 |
74007055 |
74007110 |
TTTCCGTGTTTTTTTTTCTGAATCTGTCCAACTTAAAATGTTTATGCGTGTAGCA |
55 |
CHR10FS074007055 |
| 15969646 |
257 |
581 |
10 |
74010741 |
74010798 |
GACTATGGTCTTTTGTTTGCTCACGCTGCGTCATTAATTAGTGATCGAGAAGGAAAT |
57 |
CHR10FS074010741 |
| 15969647 |
301 |
18 |
10 |
74011271 |
74011321 |
GAAACCTGGAGGTGTTCACTCATTGTCGGCACATAATCATCATCACGCCA |
50 |
CHR10FS074011271 |
| 15969648 |
438 |
508 |
10 |
74114742 |
74114804 |
GCACAACATATATAACCGTCTGTCCAACCTAAAATGTTTATGCGTGTAGCACAACATATACA |
62 |
CHR10FS074114742 |
| 15969649 |
337 |
383 |
10 |
81033782 |
81033842 |
TGATATTGACGAGAGGCTGGTTCAGAGTCAATCAAAACTTGACTAGGTTATTGGATTTCT |
60 |
CHR10FS081033782 |
| 15969650 |
334 |
576 |
10 |
81432997 |
81433051 |
AACAAAGACCTGGAAGACCTATAGCATTTTATTGAATATTTTTTCAAAGAGAAA |
54 |
CHR10FS081432997 |
| 15969651 |
414 |
396 |
10 |
95914334 |
95914384 |
CTTGCCTTTTGCCTTTTTTTTGTTTTTGGTTTCAGTGCGCCCCGAAGTCT |
50 |
CHR10FS095914334 |
| 15969652 |
115 |
312 |
10 |
118561650 |
118561700 |
TACGAAAGCTGATGGACGTCGTGTTCTCGTATCCACGTGAAGCTATGGGG |
50 |
CHR10FS118561650 |
| 15969653 |
321 |
562 |
10 |
118561944 |
118561994 |
GTTGCACATCCAGTTTGGCAGTACTGATACCGTAGTGGCCCAGACAATTC |
50 |
CHR10FS118561944 |
| 15969654 |
215 |
18 |
10 |
119760170 |
119760224 |
ATTTCAAATTAACTCATGCATACTTATCTCCTCCGCGCAACCAATCTCCACGTA |
54 |
CHR10FS119760170 |
| 15969655 |
130 |
534 |
10 |
128868590 |
128868640 |
GCCTCGCGTCGGGTTGAATCTTTAATTTGATTTGGGCCGTGCTGATCGGA |
50 |
CHR10FS128868590 |
| 15969656 |
300 |
266 |
10 |
130303771 |
130303829 |
CAAGTTGATGACCATGCATTTTGTTTTGTTTTGTTTGGTTTGTTTGCTCTGTACTCTC |
58 |
CHR10FS130303771 |
Total number of rows: 271144
Table truncated, full table size 29558 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL17181_121015_Zea_Mays_PH_CGH.ndf.gz |
15.1 Mb |
(ftp)(http) |
NDF |
| GPL17181_121015_Zea_Mays_PH_CGH.pos.gz |
2.7 Mb |
(ftp)(http) |
POS |
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