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Status
Public on Oct 22, 2013
Title
Brassica rapa 300k Microarray v2.0 [2007-10-15_GGB_B_rapa_082207]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Brassica rapa Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
Probes are designed from 47,548 UniGenes, 31,057 of which are cDNA/EST-supported genes. 47,548 clones are deposited on a Br300K microarray with seven probes of 60 nt length within the 3' 150 bp region.
Submission date
Jun 05, 2013
Last update date
Oct 22, 2013
Contact name
Yeon-Ki Kim
E-mail(s)
kim750a11@gmail.com Phone
82-31-321-6351
Organization name
GreenGene Biotech Inc.
Department
GreenGene Biotech Inc.
Lab
Genomics & Genetics Ins.
Street address
38-2 Namdong
City
Yongin
State/province
Kyonggido
ZIP/Postal code
449-728
Country
South Korea
Samples (35)
GSM1154254 , GSM1154255 , GSM1154256 , GSM1154257 , GSM1154258 , GSM1154259
GSM1154260 ,
GSM1154261 ,
GSM1154262 ,
GSM1154263 ,
GSM1154264 ,
GSM1154265 ,
GSM1154266 ,
GSM1154267 ,
GSM1944015 ,
GSM1944016 ,
GSM1944017 ,
GSM1944018 ,
GSM1944019 ,
GSM1944020 ,
GSM1944021 ,
GSM1944022 ,
GSM1944023 ,
GSM1944024 ,
GSM3689570 ,
GSM3689571 ,
GSM3689572 ,
GSM3689573 ,
GSM3689574 ,
GSM3689575 ,
GSM3689576 ,
GSM3689577 ,
GSM3689578 ,
GSM3689579 ,
GSM3689580 Series (3)
GSE47665 Comprehensive analysis of genic male sterility-related genes in Brassica rapa using Brassica rapa 300k microarray v2.0
GSE75145 Expression analysis of chinese cabbage (B.rapa ssp. pekinensis) : cold stress conditions
GSE128989 Identification of gene expression pattern in Brassica rapa floral tissues including Flowerbuds (≤ 2mm), Flowerbuds (≤ 4mm), Stamen and Carpel
Data table header descriptions ID Gene_ID Gene identifier from Brapa_1.0 assembly at brassicadb.org
Description Description
SPOT_ID
Data table ID Gene_ID Description SPOT_ID Brapa_ESTC000001
pfam08648, DUF1777, Protein of unknown function (DUF1777)
Brapa_ESTC000001
Brapa_ESTC000002
Bra014473 COG3958, COG3958, Transketolase, C-terminal subunit
Brapa_ESTC000002
Brapa_ESTC000003
Bra036727 pfam06495, Transformer, Fruit fly transformer protein
Brapa_ESTC000003
Brapa_ESTC000004
pfam08648, DUF1777, Protein of unknown function (DUF1777)
Brapa_ESTC000004
Brapa_ESTC000005
Bra018940 COG1814, COG1814, Uncharacterized membrane protein
Brapa_ESTC000005
Brapa_ESTC000006
Bra038503 NA
Brapa_ESTC000006
Brapa_ESTC000007
cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily
Brapa_ESTC000007
Brapa_ESTC000008
Bra038520 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins;
Brapa_ESTC000008
Brapa_ESTC000009
Bra031648 pfam07690, MFS_1, Major Facilitator Superfamily
Brapa_ESTC000009
Brapa_ESTC000010
Bra018399 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity
Brapa_ESTC000010
Brapa_ESTC000011
pfam07714, Pkinase_Tyr, Protein tyrosine kinase
Brapa_ESTC000011
Brapa_ESTC000012
Bra036329 pfam09335, SNARE_assoc, SNARE associated Golgi protein
Brapa_ESTC000012
Brapa_ESTC000013
Bra037584 NA
Brapa_ESTC000013
Brapa_ESTC000014
Bra037905 COG1977, MoaD, Molybdopterin converting factor, small subunit
Brapa_ESTC000014
Brapa_ESTC000015
Bra014002 NA
Brapa_ESTC000015
Brapa_ESTC000016
Bra013799 NA
Brapa_ESTC000016
Brapa_ESTC000017
smart00338, BRLZ, basic region leucin zipper;
Brapa_ESTC000017
Brapa_ESTC000018
Bra025832 cd00328, catalase, Catalase
Brapa_ESTC000018
Brapa_ESTC000019
pfam08016, PKD_channel, Polycystin cation channel
Brapa_ESTC000019
Brapa_ESTC000020
Bra007871 pfam01412, ArfGap, Putative GTPase activating protein for Arf
Brapa_ESTC000020
47554 4033 Kbytes .Supplementary file Size Download File type/resource GPL17248_2007-10-15_GGB_B_rapa_082207.ncd.gz
232 b
(ftp) (http) NCD
GPL17248_2007-10-15_GGB_B_rapa_082207.ndf.gz
17.1 Mb
(ftp) (http) NDF
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