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Platform GPL17297 Query DataSets for GPL17297
Status Public on Dec 31, 2013
Title Agilent-020586 Daphnia3_1_Of_1 4x44k custom array (Probename version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Daphnia magna
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16020586 or 2520586.

Orientation:
Features are numbered numbered Left-to-Right Top-to-Bottom as scanned by an Agilent scanner (barcode on the left DNA on the back surface scanned through the glass) matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction Probe names.
 
Submission date Jun 15, 2013
Last update date Dec 31, 2013
Contact name Kenji Toyota
E-mail(s) kenji514@nibb.ac.jp
Organization name National Institute for Basic Biology
Street address 5-1 Higashiyama
City Okazaki
ZIP/Postal code 444-8585
Country Japan
 
Samples (54) GSM1164173, GSM1164174, GSM1164175, GSM1164176, GSM1164177, GSM1164178 
Series (3)
GSE47990 Molecular impact of juvenile hormone agonists on neonatal Daphnia magna
GSE53570 Detection of juvenile hormone-like function of diofenolan in Daphnia magna using in vivo short-term screening assay, TG211 Annex 7 reproduction test and microarray analysis
GSE81083 Comparative ovarian microarray analysis of juvenile hormone-responsive genes in water flea Daphnia magna

Data table header descriptions
ID Agilent Probename. NAME.
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE
CU1000 CU1000 FALSE unmapped Contig610 AGCATCATGAAATGCGATATTGACATCCGTAAGGATCTGTACGCCAACAATGTGCTCTCC
CU10019 CU10019 FALSE unmapped N/A N/A TGCCAAAAATCGTTTGTTTCGTGGCCTTTTCTGGTTTTCTTTTCTTTAATGGTGATCAGC
CU10056 CU10056 FALSE unmapped N/A N/A TAGATGTAAGTGCAAGCTCAGCATGACAGCTCAAAGCTGGACCTGCCTCTCCATGCCCGC
CU10077 CU10077 FALSE unmapped N/A N/A TGAACTGCCGCTGCCTCCTGAATTGGGTTGCGTTGATGACGTATAGTGAGGTGACGGCAG
CU10091 CU10091 FALSE unmapped N/A N/A CCAACAGGTCGTGGCACAACGTTTACTGCGTCGTCTGCCACCAGGAGATGAGTTTCTTCA
CU10094 CU10094 FALSE unmapped N/A N/A ATCTGCTGCCGCCTTAGTTAAAGACACTCAAACTCCCATTAAAGATACGCTCACATCTTT
CU10123 CU10123 FALSE unmapped N/A N/A AAGATTTTGGAGACGGTCGGGGTGTTTGAAGCCGTGAAGCAGCATGGAAAATATGAAACA
CU10133 CU10133 FALSE unmapped N/A N/A ACGACAGAGTCTGTCCATCTCCCCGTGGCTCAGGTCTCCATACGAGCGGAAGTAAAAAGA
CU10144 CU10144 FALSE unmapped N/A N/A ATATATGAGTGAACCTTCATGAGCCTCCTGTCTGTCAACAACCGAGATTTCACCCGAGAT
CU10177 CU10177 FALSE unmapped N/A N/A TTTATGAAGGAAAGTGATTCCGTCGCTGCAGGAAAGTGTTTCCCACCGCATCAATAAACC
CU10183 CU10183 FALSE unmapped N/A N/A ATCAGCTTTCATGTTCCGTCTGTGTTTTTAACCTCTCTGCTTTCTGTCTGCCTCAAAAAA
CU10193 CU10193 FALSE unmapped N/A N/A AAGAACATCAAAAATCCGCTTCTTCCTGGTCTCTACTTGGACGCATCGCTTCAATCCGTT
CU10196 CU10196 FALSE unmapped N/A N/A TTGAAGGATTGGAGCTGCCCCCCTCTCGCTCATCCTCCACCAGTGACTGCAAGTCTCTAT
CU10208 CU10208 FALSE unmapped N/A N/A TAGCTGTCCTTATAAATGCCTCTCTTATGCACCAGCTCAAGGTGCTTTTCATTTGGGTCC
CU10210 CU10210 FALSE unmapped N/A N/A TGCTTCCCTGAAAAGCCGACGCCCCCTGGATGACCTCTGAAGTTGTCATAGTTACCACGC
CU10226 CU10226 FALSE unmapped N/A N/A AGGATTTAAAGGTTTCAGCGGCGCGACCAATGGGAGTGCTCCTGCGTTCAGGGGTTTCTC
CU10244 CU10244 FALSE unmapped N/A N/A GTTCCCCTTCACAACGAGGAAGATGACAGGATGGTTCCCTGCACTCCCACGCTTCTTCAC
CU1025 CU1025 FALSE unmapped N/A N/A TGGCATGTGCATCCCCTGCTCTTGCTGCTGTTGTTGTGAGGGCAACTCTGGCATGTGCAT
CU10262 CU10262 FALSE unmapped N/A N/A TCAAGCAGCGCTTCAGGAAGAACTTCACGGCCCTGCTGGAGGAGGAGAATTTGTCGGAGA
CU10264 CU10264 FALSE unmapped N/A N/A TTCTTTTCCCCTGTGTGGTCACAGCGCCCCCTGCTGTTTTTTATGCTCTGTCAATAAATA

Total number of rows: 43863

Table truncated, full table size 6119 Kbytes.




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Supplementary file Size Download File type/resource
GPL17297_020586_D_GEO_20080612.txt.gz 1.9 Mb (ftp)(http) TXT

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