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Platform GPL1738 Query DataSets for GPL1738
Status Public on Dec 22, 2004
Title Agilent Custom Mouse Alternative Splicing Oligo Microarray
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Description A new quantitative alternative splicing microarray platform. We describe the application of a new microarray platform, which combines information from exon body and splice-junction probes, to analyze the regulation of 3126 alternative splicing events in ten mouse tissues. The details of the methods and algorithms are described in this paper: Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform (Molecular Cell, Dec., 2004)
Keywords = A new quantitative alternative splicing microarray platform
Web link
Contributor(s) Pan Q, Shai O, Misquitta C, Zhang W, Saltzman AL, Mohammad N, Babak T, Siu H, Hughes TR, Morris QD, Frey BJ, Blencowe BJ
Submission date Dec 08, 2004
Last update date Jun 16, 2005
Contact name Qun Pan
Organization name University of Toronto
Street address 160 College St.
City Toronto
ZIP/Postal code M5S 3E1
Country Canada
Samples (10) GSM37403, GSM37452, GSM37453, GSM37454, GSM37455, GSM37456 
Series (1)
GSE2054 Quantitative microarray profiling of alternative splicing in mouse tissues

Data table header descriptions
GB_ACC GenBank Accession Number
SPOT_ID spot identifier

Data table
Ben1A BG072355 exon: Ben1A
Ben1C1 BG072355 exon: Ben1C1
Ben1C2 BG072355 exon: Ben1C2
Ben1A:Ben1C2 BG072355 splice junction: Ben1A:Ben1C2
Ben1C1:Ben1A BG072355 splice junction: Ben1C1:Ben1A
Ben1C1:Ben1C2 BG072355 splice junction: Ben1C1:Ben1C2
Ben1INT BG072355 exon: Ben1INT
Ben2A U39060 exon: Ben2A
Ben2C1 U39060 exon: Ben2C1
Ben2C2 U39060 exon: Ben2C2
Ben2A:Ben2C2 U39060 splice junction: Ben2A:Ben2C2
Ben2C1:Ben2A U39060 splice junction: Ben2C1:Ben2A
Ben2C1:Ben2C2 U39060 splice junction: Ben2C1:Ben2C2
Ben2INT U39060 exon: Ben2INT
Ben3A BY724666 exon: Ben3A
Ben3C1 BY724666 exon: Ben3C1
Ben3C2 BY724666 exon: Ben3C2
Ben3A:Ben3C2 BY724666 splice junction: Ben3A:Ben3C2
Ben3C1:Ben3A BY724666 splice junction: Ben3C1:Ben3A
Ben3C1:Ben3C2 BY724666 splice junction: Ben3C1:Ben3C2

Total number of rows: 21882

Table truncated, full table size 1000 Kbytes.

Download family Format
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Supplementary data files not provided

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