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Status
Public on Dec 22, 2004
Title
Agilent Custom Mouse Alternative Splicing Oligo Microarray
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus
Description
A new quantitative alternative splicing microarray platform. We describe the application of a new microarray platform, which combines information from exon body and splice-junction probes, to analyze the regulation of 3126 alternative splicing events in ten mouse tissues. The details of the methods and algorithms are described in this paper: Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform (Molecular Cell, Dec., 2004)
Web link
http://www.utoronto.ca/intron/GenASAP/ Contributor(s)
Pan Q , Shai O , Misquitta C , Zhang W , Saltzman AL , Mohammad N , Babak T , Siu H , Hughes TR , Morris QD , Frey BJ , Blencowe BJ Submission date
Dec 08, 2004
Last update date
Jun 16, 2005
Contact name
Qun Pan
E-mail(s)
qun.pan@utoronto.ca Organization name
University of Toronto
Street address
160 College St.
City
Toronto
ZIP/Postal code
M5S 3E1
Country
Canada
Samples (10)
GSM37403 , GSM37452 , GSM37453 , GSM37454 , GSM37455 , GSM37456
Series (1)
GSE2054 Quantitative microarray profiling of alternative splicing in mouse tissues
Data table header descriptions ID GB_ACC GenBank Accession Number
SPOT_ID spot identifier
Data table ID GB_ACC SPOT_ID Ben1A
BG072355 exon: Ben1A
Ben1C1
BG072355 exon: Ben1C1
Ben1C2
BG072355 exon: Ben1C2
Ben1A:Ben1C2
BG072355 splice junction: Ben1A:Ben1C2
Ben1C1:Ben1A
BG072355 splice junction: Ben1C1:Ben1A
Ben1C1:Ben1C2
BG072355 splice junction: Ben1C1:Ben1C2
Ben1INT
BG072355 exon: Ben1INT
Ben2A
U39060 exon: Ben2A
Ben2C1
U39060 exon: Ben2C1
Ben2C2
U39060 exon: Ben2C2
Ben2A:Ben2C2
U39060 splice junction: Ben2A:Ben2C2
Ben2C1:Ben2A
U39060 splice junction: Ben2C1:Ben2A
Ben2C1:Ben2C2
U39060 splice junction: Ben2C1:Ben2C2
Ben2INT
U39060 exon: Ben2INT
Ben3A
BY724666 exon: Ben3A
Ben3C1
BY724666 exon: Ben3C1
Ben3C2
BY724666 exon: Ben3C2
Ben3A:Ben3C2
BY724666 splice junction: Ben3A:Ben3C2
Ben3C1:Ben3A
BY724666 splice junction: Ben3C1:Ben3A
Ben3C1:Ben3C2
BY724666 splice junction: Ben3C1:Ben3C2
21882 1000 Kbytes .Supplementary data files not provided
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