GEO help: Mouse over screen elements for information.
Status
Public on Apr 01, 2019
Title
Agilent-037091 GGA_Campy_FineMapping
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Gallus gallus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16037091 or 2537091. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Jun 28, 2013
Last update date
Apr 01, 2019
Contact name
Jason Abernathy
Organization name
USDA-ARS
Lab
Aquatic Animal Health Research Unit
Street address
990 Wire Road
City
Auburn
State/province
AL
ZIP/Postal code
36832
Country
USA
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
GB_ACC
GenBank Accession number
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
DESCRIPTION
Description
Data table
ID
COL
ROW
SPOT_ID
CONTROL_TYPE
GB_ACC
GENE_SYMBOL
GENE_NAME
ACCESSION_STRING
CHROMOSOMAL_LOCATION
DESCRIPTION
1
266
170
GgaCGHBrightCorner
pos
2
266
168
DarkCorner
pos
3
266
166
DarkCorner
pos
4
266
164
DarkCorner
pos
5
266
162
DarkCorner
pos
6
266
160
DarkCorner
pos
7
266
158
DarkCorner
pos
8
266
156
DarkCorner
pos
9
266
154
DarkCorner
pos
10
266
152
DarkCorner
pos
11
266
150
DarkCorner
pos
12
266
148
A_94_P12341057
FALSE
chr5:27629476-27629530
13
266
146
A_94_P13467353
FALSE
NM_204189
UNG
uracil-DNA glycosylase
ref|NM_204189
chr15:6811888-6811941
Gallus gallus uracil-DNA glycosylase (UNG), nuclear gene encoding mitochondrial protein, mRNA.
14
266
144
A_94_P13732868
FALSE
NM_001031774
LIN28
lin-28 homolog (C. elegans)
ref|NM_001031774
chr23:149056-149100
Gallus gallus lin-28 homolog (C. elegans) (LIN28), mRNA.
15
266
142
A_94_P12068651
FALSE
chr4:54773427-54773483
16
266
140
A_94_P12916021
FALSE
NM_204884
RPE65
retinal pigment epithelium-specific protein 65kDa
ref|NM_204884
chr8:29575751-29575805
Gallus gallus retinal pigment epithelium-specific protein 65kDa (RPE65), mRNA.
17
266
138
A_94_P12599272
FALSE
chr6:28227991-28228049
18
266
136
A_94_P11317878
FALSE
chr2:136427966-136428025
19
266
134
A_94_P10619424
FALSE
chr1:158582004-158582049
20
266
132
A_94_P10317301
FALSE
chr1:81156390-81156449
Total number of rows: 45220 Table truncated, full table size 3826 Kbytes .
Supplementary data files not provided