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Platform GPL17381 Query DataSets for GPL17381
Status Public on Apr 01, 2019
Title Agilent-037091 GGA_Campy_FineMapping
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Gallus gallus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16037091 or 2537091.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jun 28, 2013
Last update date Apr 01, 2019
Contact name Jason Abernathy
Organization name USDA-ARS
Lab Aquatic Animal Health Research Unit
Street address 990 Wire Road
City Auburn
State/province AL
ZIP/Postal code 36832
Country USA
 

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION
1 266 170 GgaCGHBrightCorner pos
2 266 168 DarkCorner pos
3 266 166 DarkCorner pos
4 266 164 DarkCorner pos
5 266 162 DarkCorner pos
6 266 160 DarkCorner pos
7 266 158 DarkCorner pos
8 266 156 DarkCorner pos
9 266 154 DarkCorner pos
10 266 152 DarkCorner pos
11 266 150 DarkCorner pos
12 266 148 A_94_P12341057 FALSE chr5:27629476-27629530
13 266 146 A_94_P13467353 FALSE NM_204189 UNG uracil-DNA glycosylase ref|NM_204189 chr15:6811888-6811941 Gallus gallus uracil-DNA glycosylase (UNG), nuclear gene encoding mitochondrial protein, mRNA.
14 266 144 A_94_P13732868 FALSE NM_001031774 LIN28 lin-28 homolog (C. elegans) ref|NM_001031774 chr23:149056-149100 Gallus gallus lin-28 homolog (C. elegans) (LIN28), mRNA.
15 266 142 A_94_P12068651 FALSE chr4:54773427-54773483
16 266 140 A_94_P12916021 FALSE NM_204884 RPE65 retinal pigment epithelium-specific protein 65kDa ref|NM_204884 chr8:29575751-29575805 Gallus gallus retinal pigment epithelium-specific protein 65kDa (RPE65), mRNA.
17 266 138 A_94_P12599272 FALSE chr6:28227991-28228049
18 266 136 A_94_P11317878 FALSE chr2:136427966-136428025
19 266 134 A_94_P10619424 FALSE chr1:158582004-158582049
20 266 132 A_94_P10317301 FALSE chr1:81156390-81156449

Total number of rows: 45220

Table truncated, full table size 3826 Kbytes.




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