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Status
Public on Jul 17, 2013
Title
NimbleGen-hCMV-4X72K tiling array [090115_CMV_ES_ChIP]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Human betaherpesvirus 5 Manufacturer
NimbleGen
Manufacture protocol
see manufacturer's web site www.nimblegen.com
Description
Probes on the array are based on the hCMV TB40E sequence (NCBI GenBank: EF999921)
Submission date
Jul 15, 2013
Last update date
Jul 17, 2013
Contact name
Desiree Tillo
E-mail(s)
desiree.tillo@nih.gov Phone
+1-240-760-7289
Organization name
NIH/NCI
Street address
41 Center Dr, Room D310
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (33)
GSM1186232 , GSM1186233 , GSM1186234 , GSM1186235 , GSM1186236 , GSM1186237
GSM1186243 ,
GSM1186244 ,
GSM1186245 ,
GSM1186246 ,
GSM1186247 ,
GSM1186248 ,
GSM1186249 ,
GSM1186250 ,
GSM1186251 ,
GSM1186252 ,
GSM1186253 ,
GSM1186254 ,
GSM1186255 ,
GSM1186256 ,
GSM1186257 ,
GSM1186258 ,
GSM1186259 ,
GSM1186260 ,
GSM1187687 ,
GSM1187688 ,
GSM1187689 ,
GSM1187690 ,
GSM1187691 ,
GSM1187692 ,
GSM1187693 ,
GSM1187694 ,
GSM1187695 Series (1)
GSE48875 Nucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein
Data table header descriptions ID PROBE_ID
SEQUENCE Probe sequence
RANGE_START Chromosomal start position of oligo
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo
RANGE_STRAND Indicates strand represented
GENOME_ACC Genbank accession of sequence source
Data table ID SEQUENCE RANGE_START LENGTH RANGE_END RANGE_STRAND GENOME_ACC EF999921FS000000001
GAGTCTGATCCAACACTGAACGCTTTCGTCGTGTTTTTCATGCAGCTTTTA
1
51
51
+
EF999921.1
EF999921_RS000000001
TAAAAGCTGCATGAAAAACACGACGAAAGCGTTCAGTGTTGGATCAGACTC
1
51
51
-
EF999921.1
EF999921FS000000009
TCCAACACTGAACGCTTTCGTCGTGTTTTTCATGCAGCTTTTACAGACCAT
9
51
59
+
EF999921.1
EF999921_RS000000009
ATGGTCTGTAAAAGCTGCATGAAAAACACGACGAAAGCGTTCAGTGTTGGA
9
51
59
-
EF999921.1
EF999921FS000000017
TGAACGCTTTCGTCGTGTTTTTCATGCAGCTTTTACAGACCATGACAAGC
17
50
66
+
EF999921.1
EF999921_RS000000017
GCTTGTCATGGTCTGTAAAAGCTGCATGAAAAACACGACGAAAGCGTTCA
17
50
66
-
EF999921.1
EF999921FS000000023
CTTTCGTCGTGTTTTTCATGCAGCTTTTACAGACCATGACAAGCCTGACG
23
50
72
+
EF999921.1
EF999921_RS000000023
CGTCAGGCTTGTCATGGTCTGTAAAAGCTGCATGAAAAACACGACGAAAG
23
50
72
-
EF999921.1
EF999921FS000000031
GTGTTTTTCATGCAGCTTTTACAGACCATGACAAGCCTGACGAGAGCGTT
31
50
80
+
EF999921.1
EF999921_RS000000031
AACGCTCTCGTCAGGCTTGTCATGGTCTGTAAAAGCTGCATGAAAAACAC
31
50
80
-
EF999921.1
EF999921FS000000037
TTCATGCAGCTTTTACAGACCATGACAAGCCTGACGAGAGCGTTCATCGG
37
50
86
+
EF999921.1
EF999921_RS000000037
CCGATGAACGCTCTCGTCAGGCTTGTCATGGTCTGTAAAAGCTGCATGAA
37
50
86
-
EF999921.1
EF999921FS000000047
TTTTACAGACCATGACAAGCCTGACGAGAGCGTTCATCGGGGCATGAAGT
47
50
96
+
EF999921.1
EF999921_RS000000047
ACTTCATGCCCCGATGAACGCTCTCGTCAGGCTTGTCATGGTCTGTAAAA
47
50
96
-
EF999921.1
EF999921FS000000053
AGACCATGACAAGCCTGACGAGAGCGTTCATCGGGGCATGAAGTACGCAT
53
50
102
+
EF999921.1
EF999921_RS000000053
ATGCGTACTTCATGCCCCGATGAACGCTCTCGTCAGGCTTGTCATGGTCT
53
50
102
-
EF999921.1
EF999921FS000000061
ACAAGCCTGACGAGAGCGTTCATCGGGGCATGAAGTACGCATTACACAAA
61
50
110
+
EF999921.1
EF999921_RS000000061
TTTGTGTAATGCGTACTTCATGCCCCGATGAACGCTCTCGTCAGGCTTGT
61
50
110
-
EF999921.1
EF999921FS000000067
CTGACGAGAGCGTTCATCGGGGCATGAAGTACGCATTACACAAACTCCAT
67
50
116
+
EF999921.1
EF999921_RS000000067
ATGGAGTTTGTGTAATGCGTACTTCATGCCCCGATGAACGCTCTCGTCAG
67
50
116
-
EF999921.1
65124 6433 Kbytes .Supplementary file Size Download File type/resource GPL17446_090115_CMV_ES_ChIP.ndf.gz
3.6 Mb
(ftp) (http) NDF
GPL17446_090115_CMV_ES_ChIP.ngd.gz
3.6 Kb
(ftp) (http) NGD
GPL17446_090115_CMV_ES_ChIP.pos.gz
443.5 Kb
(ftp) (http) POS
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