 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jan 30, 2014 |
| Title |
Illumina HumanHT-12_V3_0_R1_Bioconductor_2.11 |
| Technology type |
oligonucleotide beads |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Illumina, Inc. |
| Manufacture protocol |
See manufacturer's website.
|
| |
|
| |
|
| Submission date |
Jul 31, 2013 |
| Last update date |
Jan 30, 2014 |
| Contact name |
Matteo Dugo |
| E-mail(s) |
dugo.matteo@hsr.it
|
| Organization name |
IRCCS Ospedale San Raffaele
|
| Department |
Department of Medical Oncology
|
| Street address |
via Olgettina 60
|
| City |
Milan |
| ZIP/Postal code |
20132 |
| Country |
Italy |
| |
|
| Samples (181)
|
GSM1199038, GSM1199039, GSM1199040, GSM1199041, GSM1199042, GSM1199043
GSM1439766, GSM1439767, GSM1439768, GSM1439769, GSM1439770, GSM1439771, GSM1439772, GSM1439773, GSM1439774, GSM1439775, GSM1439776, GSM1439777, GSM1439778, GSM1439779, GSM1439780, GSM1439781, GSM1439782, GSM1439783, GSM1439784, GSM1439785, GSM1439786, GSM1439787, GSM1439788, GSM1439789, GSM1439790, GSM1439791, GSM1439792, GSM1439793, GSM1439794, GSM1439795, GSM1439796, GSM1439797, GSM1439798, GSM1439799, GSM1439800, GSM1439801, GSM1439802, GSM1439803, GSM1439804, GSM1439805, GSM1439806, GSM1439807, GSM1439808, GSM1439809, GSM1439810, GSM1439811, GSM1439812, GSM1439813, GSM1439814, GSM1439815, GSM1439816, GSM1439817, GSM1439818, GSM1439819, GSM1439820, GSM1439821, GSM1439822, GSM1439823, GSM1439824, GSM1439825, GSM1439826, GSM1439827, GSM1439828, GSM1439829, GSM1439830, GSM1439831, GSM1439832, GSM1439833, GSM1439834, GSM1439835, GSM1439836, GSM1439837, GSM1439838, GSM1439839, GSM1439840, GSM1439841, GSM1439842, GSM1439843, GSM1439844, GSM1439845, GSM1439846, GSM1439847, GSM1439848, GSM1439849, GSM1439850, GSM1439851, GSM1439852, GSM1439853, GSM1439854, GSM1439855, GSM1439856, GSM1439857, GSM1439858, GSM1439859, GSM1439860, GSM1439861, GSM1439862, GSM1439863, GSM1439864, GSM1439865, GSM1439866, GSM1439867, GSM1439868, GSM1439869, GSM1439870, GSM1439871, GSM1439872, GSM1439873, GSM1439874, GSM1439875, GSM1439876, GSM1439877, GSM1439878, GSM1439879, GSM1439880, GSM1439881, GSM1439882, GSM1439883, GSM1439884, GSM1439885, GSM1439886, GSM1439887, GSM1439888, GSM1439889, GSM1439890, GSM1439891, GSM1439892, GSM1439893, GSM1439894, GSM1439895, GSM1439896, GSM1439897, GSM1439898, GSM1439899, GSM1439900, GSM1439901, GSM1439902, GSM1439903, GSM1439904, GSM1439905, GSM1439906, GSM1439907, GSM1439908, GSM1439909, GSM1439910, GSM1439911, GSM1439912, GSM1439913, GSM1439914, GSM1439915, GSM1439916, GSM1439917, GSM1439918, GSM1439919, GSM1439920, GSM1439921, GSM1439922, GSM1439923, GSM1439924, GSM1439925, GSM1439926, GSM1439927, GSM1439928, GSM1439929, GSM1439930, GSM1439931, GSM1439932, GSM1439933, GSM1439934, GSM1439935, GSM1439936, GSM1439937, GSM1439938, GSM1439939, GSM1439940
|
| Series (4)
|
| GSE49414 |
Gene expression profiling in TPC1 cell line treated with the RTK inhibitor RPI-1 |
| GSE49415 |
hsa-miR-199a-3p is an oncosuppressor microRNA in papillary thyroid carcinoma |
| GSE59590 |
Gene and microRNA expression profiling of breast tumors from Chinese and Italian women [gene] |
| GSE59595 |
Gene and microRNA expression profiling of breast tumors from Chinese and Italian women |
|
| Data table header descriptions |
| ID |
ILMN_ID; Probe identifier |
| Source |
Transcript sequence source name |
| Array_Address_ID |
Decoder identifier |
| Symbol |
Gene symbol retrieved from illuminaHumanv3.db package, Bioconductor version 2.11 |
| ENTREZ_GENE_ID |
Entrez Gene ID retrieved from illuminaHumanv3.db package, Bioconductor version 2.11 |
| GB_LIST |
RefSeq nucleotide accessions |
| REFSEQ |
RefSeq accession retrieved from illuminaHumanv3.db package, Bioconductor version 2.11 |
| ENSEMBL |
ENSEMBL id retrieved from illuminaHumanv3.db package, Bioconductor version 2.11 |
| CHR |
Chromosome |
| SPOT_ID |
|
| SEQUENCE |
Probe sequence |
| Data table |
| ID |
Source |
Array_Address_ID |
Symbol |
ENTREZ_GENE_ID |
GB_LIST |
REFSEQ |
ENSEMBL |
CHR |
SPOT_ID |
SEQUENCE |
| ILMN_1762337 |
RefSeq |
6450255 |
MACC1 |
346389 |
NM_182762 |
NM_182762;NP_877439 |
ENSG00000183742 |
7 |
|
GTGTTACAAGACCTTCAGTCAGCTTTGGACAGAATGAAAAACCCTGTGAC |
| ILMN_2055271 |
RefSeq |
2570615 |
|
|
|
NA |
NA |
NA |
ILMN_2055271 |
GGGATTACAGGGGTGAGCCACCACGCCCAGCCCCAGCTTAGTTTTTTAAA |
| ILMN_1736007 |
RefSeq |
6370619 |
|
|
|
NA |
NA |
NA |
ILMN_1736007 |
GCAGAGCTGGACGCTGTGGAAATGGCTGGATTCCTCTGTGTTCTTTCCCA |
| ILMN_2383229 |
RefSeq |
2600039 |
A1CF |
29974 |
NM_001198818 NM_001198819 NM_001198820 NM_014576 NM_138932 NM_138933 |
NM_001198818;NM_001198819;NM_001198820;NM_014576;NM_138932;NM_138933;NP_001185747;NP_001185748;NP_001185749;NP_055391;NP_620310;NP_620311 |
ENSG00000148584 |
10 |
|
TGCTGTCCCTAATGCAACTGCACCCGTGTCTGCAGCCCAGCTCAAGCAAG |
| ILMN_1806310 |
RefSeq |
2650615 |
A1CF |
29974 |
NM_001198818 NM_001198819 NM_001198820 NM_014576 NM_138932 NM_138933 |
NM_001198818;NM_001198819;NM_001198820;NM_014576;NM_138932;NM_138933;NP_001185747;NP_001185748;NP_001185749;NP_055391;NP_620310;NP_620311 |
ENSG00000148584 |
10 |
|
GAGGTCTACCCAACTTTTGCAGTGACTGCCCGAGGGGATGGATATGGCAC |
| ILMN_1779670 |
RefSeq |
5340672 |
A1CF |
29974 |
NM_001198818 NM_001198819 NM_001198820 NM_014576 NM_138932 NM_138933 |
NM_001198818;NM_001198819;NM_001198820;NM_014576;NM_138932;NM_138933;NP_001185747;NP_001185748;NP_001185749;NP_055391;NP_620310;NP_620311 |
ENSG00000148584 |
10 |
|
GGCACATGCCCAGAGCCAGAAGCGAGCATGAGCACAGCAATTCCTGGCCT |
| ILMN_2321282 |
RefSeq |
1090041 |
POTEA |
340441 |
NM_001002920 NM_001005365 |
NM_001002920;NM_001005365;NP_001002920;NP_001005365 |
NA |
8 |
|
GCTCCTCAGAAAGGTGAATGTGAGCAAGAACGCTACAGTTCGAGTGAAGA |
| ILMN_1671474 |
RefSeq |
6380561 |
POTEA |
340441 |
NM_001002920 NM_001005365 |
NM_001002920;NM_001005365;NP_001002920;NP_001005365 |
NA |
8 |
|
AGTGGATAACCTTGATGACATAACATGGCCATCAGAAATAGCGTCAGAGG |
| ILMN_1772582 |
RefSeq |
7570255 |
|
|
|
NA |
NA |
NA |
ILMN_1772582 |
GCCAGTGCTGGCAATGGTGATGATGGATTAATTCCACAAAGGAAGAGCAG |
| ILMN_1735698 |
RefSeq |
4920477 |
|
|
|
NA |
NA |
NA |
ILMN_1735698 |
GATCTGTTGGCTACTACTGGCTTCTCCTGGCTGTTAAAAGCAGATGGTGG |
| ILMN_1653355 |
RefSeq |
2000519 |
|
|
|
NA |
NA |
NA |
ILMN_1653355 |
CTGCTCTACATCTGGCCTCTGCCAATGGAAATTCAGAAGTAGTAAAACTC |
| ILMN_1717783 |
RefSeq |
3870044 |
POTEH |
23784 |
NM_001004053 NM_001136213 |
NM_001004053;NM_001136213;NP_001129685 |
ENSG00000198062 |
22 |
|
GTCATGCTAAGACTGGAACTAGACATAATGAAACATCAGAGCCAGCTAAG |
| ILMN_1705025 |
RefSeq |
7050209 |
|
|
|
NA |
NA |
NA |
ILMN_1705025 |
GCCTCTGCCAATGGAAATTCAGAAGTAGTAAAACTCCTGCTGGACAGACG |
| ILMN_1814316 |
RefSeq |
1580181 |
RBFOX1 |
54715 |
NM_001142333 NM_001142334 NM_018723 NM_145891 NM_145892 NM_145893 |
NM_001142333;NM_001142334;NM_018723;NM_145891;NM_145892;NM_145893;NP_001135805;NP_001135806;NP_061193;NP_665898;NP_665899;NP_665900 |
ENSG00000078328 |
16 |
|
CAGTGACAGTTACGGACGAGTTTATGCTGCCGACCCCTACCACCACGCAC |
| ILMN_2359168 |
RefSeq |
5220554 |
RBFOX1 |
54715 |
NM_001142333 NM_001142334 NM_018723 NM_145891 NM_145892 NM_145893 |
NM_001142333;NM_001142334;NM_018723;NM_145891;NM_145892;NM_145893;NP_001135805;NP_001135806;NP_061193;NP_665898;NP_665899;NP_665900 |
ENSG00000078328 |
16 |
|
CAGTTACGGACGAGTTTATGCTGCCGACCCCTACCACCACGCACTTGCTC |
| ILMN_1731507 |
RefSeq |
5390438 |
RBFOX1 |
54715 |
NM_001142333 NM_001142334 NM_018723 NM_145891 NM_145892 NM_145893 |
NM_001142333;NM_001142334;NM_018723;NM_145891;NM_145892;NM_145893;NP_001135805;NP_001135806;NP_061193;NP_665898;NP_665899;NP_665900 |
ENSG00000078328 |
16 |
|
AAATCAGTTCGTCTTCGTTGCAGCAGATGAAATTTCTTGTAACACCTCTG |
| ILMN_1787689 |
RefSeq |
6420681 |
RBFOX1 |
54715 |
NM_001142333 NM_001142334 NM_018723 NM_145891 NM_145892 NM_145893 |
NM_001142333;NM_001142334;NM_018723;NM_145891;NM_145892;NM_145893;NP_001135805;NP_001135806;NP_061193;NP_665898;NP_665899;NP_665900 |
ENSG00000078328 |
16 |
|
CTCCAGCTTATGGTGAGTGTGGCTGGGGGTGCAGAGAGCGCACGGGAATT |
| ILMN_1745607 |
RefSeq |
2370438 |
A2M |
2 |
NM_000014 |
NM_000014;NP_000005 |
ENSG00000175899 |
12 |
|
CTTGGAAATGCTTGAAGACCACAAGGCTGAAAAGTGCTTTGCTGGAGTCC |
| ILMN_2136495 |
RefSeq |
4050154 |
A2ML1 |
144568 |
NM_144670 |
NM_144670;NP_653271;NR_046256 |
ENSG00000166535 |
12 |
|
TGTAATCGCAGCCCCTTGGAAGGCCAAGGCAGGAGAATCGCCTCAACACT |
| ILMN_1668111 |
RefSeq |
1740066 |
|
|
|
NA |
NA |
NA |
ILMN_1668111 |
TCTTCTGGCTGCACAAGCCCGCCAAGGTGCTGTCGCCCGAGTTCTGCTGG |
Total number of rows: 48802
Table truncated, full table size 7275 Kbytes.
| Supplementary data files not provided |
|
|
|
|
 |
Less...
More...