NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL17522 Query DataSets for GPL17522
Status Public on Aug 02, 2013
Title Agilent-015482 Homo sapiens Claudia ChX zoom
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description chX150-154; chrX:97-107; chrX:6.2-8.6; 1000 Y; 1000 autosomal controls

Arrays of this design have barcodes that begin with 16015482 or 2515482.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Aug 01, 2013
Last update date Aug 02, 2013
Contact name James Lupski
E-mail(s) jluspki@bcm.tmc.edu
Organization name Baylor College of Medicine
Street address One Baylor Plaza, 604B
City Houston
ZIP/Postal code 77030
Country USA
 
Samples (9) GSM1199307, GSM1199308, GSM1199309, GSM1199310, GSM1199311, GSM1199312 
Series (2)
GSE49446 High-resolution custom array spanning Xq28 region to study patients carrying MECP2 copy number gain (part 2)
GSE49447 High-resolution custom array spanning Xq28 region to study patients carrying MECP2 copy number gain

Data table header descriptions
ID Agilent feature number
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION NCBI Build 36
CYTOBAND Cytoband
DESCRIPTION Description
SEQUENCE
SPOT_ID Spot identifier

Data table
ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION SEQUENCE SPOT_ID
(-)3xSLv1 neg (-)3xSLv1
A_14_P100014 FALSE NM_001098515 MRGPRF "MAS-related GPR, member F" ref|NM_001098515|ref|NM_145015 chr11:68771883-68771942 hs|q13.3 "Homo sapiens MAS-related GPR, member F (MRGPRF), transcript variant 1, mRNA." TTATTGATATACATTTTGTCTTTTATAAAACTTCCGTTGGCCACATTGGGCCACTGTGCA A_14_P100014
A_14_P100094 FALSE NM_005068 SIM1 single-minded homolog 1 (Drosophila) ref|NM_005068 chr6:100900307-100900366 hs|q16.3 "Homo sapiens single-minded homolog 1 (Drosophila) (SIM1), mRNA." CTTCATTAGGATAAGAGATGAGCATCTAATTCTTGCTATCAAAATGTGGTGAAGCCAGTG A_14_P100094
A_14_P100123 FALSE NR_026550 BRP44 brain protein 44 ref|NR_026550|ref|NM_001143674|ref|NM_015415 chr1:167901229-167901288 hs|q24.2 "Homo sapiens brain protein 44 (BRP44), transcript variant 3, non-coding RNA." TAAGAATGATATTCTCAGCACCAGCACATTAAGCACTGCAACAAGTTTCACAGAACTATT A_14_P100123
A_14_P100135 FALSE NM_018009 TAPBPL TAP binding protein-like ref|NM_018009 chr12:6564428-6564487 hs|p13.31 "Homo sapiens TAP binding protein-like (TAPBPL), mRNA." GAACCCCGAAACGCATGTTTAAACCCCAAATACATCCATAGCATGTATTAGTTTACAATG A_14_P100135
A_14_P100229 FALSE NM_001199973 RPL36A-HNRNPH2 RPL36A-HNRNPH2 readthrough ref|NM_001199973|ref|NM_001199974|ref|NM_001032393|ref|NM_019597 chrX:100664179-100664238 hs|q22.1 "Homo sapiens RPL36A-HNRNPH2 readthrough (RPL36A-HNRNPH2), transcript variant 1, mRNA." CTTGTAAATCTGTCACTGAGACCTTAGGATGGTTAATAGGAAAACTGTTATCACTGCAGA A_14_P100229
A_14_P100263 FALSE chr2:101114451-101114510 hs|q11.2 CTCCTAACAATAGTTTGCCTTAAGTATGTGTGCAAGTTCCTCAGGTGGAGAATATTAGTA A_14_P100263
A_14_P100325 FALSE ens|ENST00000477014 chrX:102865128-102865187 hs|q22.2 GATGCGATTCTTTTTCTTTTCTTTGCTCTCACTCATCTCTACCTTTTCTTAAAGGATATG A_14_P100325
A_14_P100326 FALSE chrX:8032061-8032120 hs|p22.31 GTTTGGCAGTCCCTCTTTTCTCACAATCATTGAATAAATGAAGTATTTACAGATGCACAG A_14_P100326
A_14_P100484 FALSE chr10:4396261-4396320 hs|p15.1 CTGGCACCTGGACAACATAATATTTTCATTGCTGAGTCATTTCCTCTGGTAAATTTTATC A_14_P100484
A_14_P100676 FALSE NM_001199973 RPL36A-HNRNPH2 RPL36A-HNRNPH2 readthrough ref|NM_001199973|ref|NM_001199974|ref|NM_000169 chrX:100659116-100659175 hs|q22.1 "Homo sapiens RPL36A-HNRNPH2 readthrough (RPL36A-HNRNPH2), transcript variant 1, mRNA." GAATTGTTTTTCCAGATTTTCTTTTGTCTCTCTTATCCCGTTAATATTCCCGCCCTAAAA A_14_P100676
A_14_P100697 FALSE NM_021963 NAP1L2 nucleosome assembly protein 1-like 2 ref|NM_021963 chrX:72433198-72433257 hs|q13.2 "Homo sapiens nucleosome assembly protein 1-like 2 (NAP1L2), mRNA." ATGAGGAGAGAAAAAATTGAAAAATGAATCCTTGGGAAAATCTTCAGTTACAGTTCGGAT A_14_P100697
A_14_P100798 FALSE NM_001129765 NSDHL NAD(P) dependent steroid dehydrogenase-like ref|NM_001129765|ref|NM_015922 chrX:152037726-152037780 hs|q28 "Homo sapiens NAD(P) dependent steroid dehydrogenase-like (NSDHL), transcript variant 2, mRNA." ATGAAATAACATCCTTTGAATGAGTTTGCTCTGAGCCTGTGACTCCTTCTGCTAG A_14_P100798
A_14_P100806 FALSE NM_003377 VEGFB vascular endothelial growth factor B ref|NM_003377 chr11:64002946-64002991 hs|q13.1 "Homo sapiens vascular endothelial growth factor B (VEGFB), mRNA." CTGATGCCCCTGGCCACCAGAGGAAAGGTAATACTTACAAAAACTC A_14_P100806
A_14_P100858 FALSE NM_152519 C2orf67 chromosome 2 open reading frame 67 ref|NM_152519 chr2:210999457-210999516 hs|q34 "Homo sapiens chromosome 2 open reading frame 67 (C2orf67), mRNA." GGCTGTGGTATTTTCACATATAACTGACAGGAAGAAAAAGAGAATGGAAACCTACATTTC A_14_P100858
A_14_P100920 FALSE NM_001105243 PCDH19 protocadherin 19 ref|NM_001105243|ref|NM_001184880|ref|NM_020766 chrX:99547051-99547110 hs|q22.1 "Homo sapiens protocadherin 19 (PCDH19), transcript variant 1, mRNA." GTAAGCCTATTGCAACTAATACCTTAGCATTCAAATAGCACAAGGAGGTATTTGTTGCTG A_14_P100920
A_14_P100923 FALSE NM_001184782 CXorf57 chromosome X open reading frame 57 ref|NM_001184782|ref|NM_018015 chrX:105922448-105922507 hs|q22.3 "Homo sapiens chromosome X open reading frame 57 (CXorf57), transcript variant 2, mRNA." CTATAAACTTGTGGGATTTTCTTGTAGCCCTATAGTTCTGTGACTTCATTTGCTATACGC A_14_P100923
A_14_P100934 FALSE NM_024832 RIN3 Ras and Rab interactor 3 ref|NM_024832 chr14:93076086-93076145 hs|q32.12 "Homo sapiens Ras and Rab interactor 3 (RIN3), mRNA." ATGGGCTTTAGAGAAAAATCTTGACTGTCTCCGCTTACAGAAGTTGTATATGCTCATTAT A_14_P100934
A_14_P100935 FALSE ens|ENST00000418307 chrX:8425578-8425637 hs|p22.31 TTTCAAGTGGTAGGGATACATACATCTTTAACTTTCCTCAATATTGCTAATTGCCCACCA A_14_P100935
A_14_P100955 FALSE NM_001006612 WBP5 WW domain binding protein 5 ref|NM_001006612|ref|NM_001006613|ref|NM_001006614|ref|NM_016303 chrX:102612745-102612804 hs|q22.2 "Homo sapiens WW domain binding protein 5 (WBP5), transcript variant 2, mRNA." TTTAGAGAAAGGCTGATTCAATCTCTCCAGGAGTTTAAAGAAGATATACACAACAGGCAT A_14_P100955

Total number of rows: 43896

Table truncated, full table size 9021 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL17522_015482_D_GEO_20130717.txt.gz 2.3 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap