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Platform GPL17575 Query DataSets for GPL17575
Status Public on Aug 15, 2013
Title NimbleGen human oral metagenome array [HuMiChip V1.0]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism human metagenome
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description Microbial ecological functional gene array targeting 139 gene families that play important roles in various pathways

The array originally targeted microbial sequences from several different human body, however, the current platform data table represents the oral microbial portion.

Since this is a functional gene array designed from some draft bacterial genomes and metagenomes, standard sequence identifier numbers for most of them are not available at the time the probes were designed. Thus only the gene name for the probes are provided.

DESIGN_ID: 11639
native array description file: HuMiChip.ndf
 
Submission date Aug 14, 2013
Last update date Aug 15, 2013
Contact name Qichao Tu
E-mail(s) philloid@gmail.com
Organization name University of Oklahoma
Street address 101 David L Boren Blvd
City Norman
State/province OK
ZIP/Postal code 73019
Country USA
 
Samples (20) GSM1208444, GSM1208445, GSM1208446, GSM1208447, GSM1208448, GSM1208449 
Series (1)
GSE49875 HuMiChip analysis of Saliva microbiota

Data table header descriptions
ID SEQ_ID
SEQUENCE PROBE_SEQUENCE
DESCRIPTION Gene name of the probe
LENGTH
SPOT_ID

Data table
ID SEQUENCE DESCRIPTION LENGTH SPOT_ID
in_2_fig_4440640.3.peg.116787_166 AAGGGGCTTGTTATGGAACAGCTTGCAACTTATGGGGATTATGATAGAGA ADP-ribose pyrophosphatase 50 in_2_fig_4440640.3.peg.116787_166
160938019_31 ACCGGGGATAAACAGACTGTGTATTTAAAAAACGTAATTACAGATCCGGC serine O-acetyltransferase 50 160938019_31
fig_4440613.3.peg.31234_404 GGGCGATGTACTGCGCAAAATTGGTGCGCCCAACGGCCTGTCATTGAAAG gamma-glutamyl kinase 50 fig_4440613.3.peg.31234_404
255693703_52 GCTGCCGAACGGGGTGAAGTGCCTGTAGGGGCGGTCGTTGTTTGTAAAGA cytosine deaminase 50 255693703_52
227485483_62 GGGATATTATTTTTGCAGACGATGCTCGTAGGTATATCGTTGTTTCTGCG aspartate kinase 50 227485483_62
fig_4440640.3.peg.105726_41 GGGCCATTGGTGCTTCGGCCGTCCTTTTGATCTGCGCCATCCTCGATGAT Indole-3-glycerol-phosphate synthase 50 fig_4440640.3.peg.105726_41
in_2_154509046_63 TCCCGTGACGGGGCCCGTGGTGACGGATTCCCGCGAGGCTCAGGCAGGGT UDP-N-acetylmuramoyl-L-alanyl-D-glutamatemeso-diaminopimelate ligase 50 in_2_154509046_63
fig_4440640.3.peg.165279_143 CGGTGGGCTATGGGGACGGCTATCCCAGAAGCCTGTCCAACCGCATGGTG alanine racemase 50 fig_4440640.3.peg.165279_143
223986913_882 GGGCGTCTGCTGCGCGATCATGACGGACGGCCCGTGCTTTGTTCCGTATA N-Acetylglucosamine-6-Phosphate Deacetylase 50 223986913_882
in_8_fig_4440947.3.peg.32836_428 TGTTTCATCAGTCACATGTAGGTTGTACTGCTTTTCTGGGAGGTATTTCC UDP-N-acetylmuramateL-alanine ligase 50 in_8_fig_4440947.3.peg.32836_428
212703696_1 ATGCACGAGATCCCCCTGCAACGTGTGGCCGCCATCCATGATCTTTCCGG Pyridoxal Kinase 50 212703696_1
fig_4440947.3.peg.23601_106 AGGGGAACCTATACATCCGTAGGGGAAATAAAACGTTTAAACCGAAAAGC alpha-mannosidase 50 fig_4440947.3.peg.23601_106
fig_4440946.3.peg.320_846 GGGGAAGGTCTCCCCACGCCAAGGGGCTCCAATTTTCGGCGGGAAAGAAA beta-N-acetyl-D-hexosaminide N-acetylhexosaminohydrolase 50 fig_4440946.3.peg.320_846
239627738_981 TTTGGGGGACCACGGACTGCTGTTTAAGGGGCCGTTCCACTATGACTGTA N-acetyl-D-glucosamine-6-sulfate 6-sulfohydrolase 50 239627738_981
ex_2_255328895_1144 AAGGGGTACGAGATCACACTCCCCGATCCTCCCCACGACACTTGCCTCTT phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase 50 ex_2_255328895_1144
fig_4440640.3.peg.107678_133 CAGGGCGGCGATGCTTCCTATCTGCGGGAACAGGAAAAGTTCCGGCTGTC thymidine phosphorylase 50 fig_4440640.3.peg.107678_133
ex_2_116513831_1069 GTCCTTTTGGCCGGGGGCCTGGACCGGGGCTTTGTCTTTGACTCCCTGGT UDP-N-acetylmuramoyl-L-alanyl-D-glutamatemeso-diaminopimelate ligase 50 ex_2_116513831_1069
213961414_730 ACTACGGGGAATGCTGAGCGTTTCGAGAAACTGGGACGACGGCTGATGGA glutamate racemase 50 213961414_730
fig_4440948.3.peg.15808_85 GCCGTGGCCCAGCACCGTATCGCAGGTCTGAAGTTCGCAGGAGGTATTTT UDP-N-acetylmuramateL-alanine ligase 50 fig_4440948.3.peg.15808_85
238021398_71 AGGGGCGCGGCATCGACCAAACCGCGCTGGATAACTGGGCAACGCAAATC gamma-glutamyl kinase 50 238021398_71

Total number of rows: 3685

Table truncated, full table size 462 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL17575_HuMiChip.ndf.gz 2.1 Mb (ftp)(http) NDF

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