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Platform GPL17592 Query DataSets for GPL17592
Status Public on Feb 28, 2014
Title KTH RAT 27k Oligo Microarray platform ver3
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Rattus norvegicus
Manufacturer KTH Microarray Center.
Manufacture protocol http://www.biotech.kth.se/molbio/microarray/
 
Description Mcroarray containing 27K rat 70-mer oligo probe sets produced at the KTH Microarray Center (www.biotech.kth.se)
 
Submission date Aug 20, 2013
Last update date Feb 28, 2014
Contact name Leandro Fernandez-Perez
E-mail(s) Lfernandez@dcc.ulpgc.es
Phone 34 928 452736
Organization name University of Las Palmas de Gran Canaria
Department Clinical Sciences
Lab Pharmacology
Street address Campus of San Cristóbal
City Las Palmas de Gran Canaria
State/province Las Palmas
ZIP/Postal code 35016
Country Spain
 
Samples (28) GSM1212418, GSM1212419, GSM1212420, GSM1212421, GSM1212422, GSM1212423 
Series (2)
GSE50014 Effects of estradiol and growth hormone on liver transcriptome in hypothyroid-orquiectomized rats
GSE111718 Effects of Testosterone and GH on liver transcriptome

Data table header descriptions
ID Rat_Oligo ID
ORF
GB_ACC GenBank Accession number
GENE SYMBOL Gene symbols
DESCRIPTION Gene description
SEQUENCE Oligo sequence
SPOT_ID

Data table
ID ORF GB_ACC GENE SYMBOL DESCRIPTION SEQUENCE SPOT_ID
RatOligo01A04 ENSRNOT00000032433 TTTCCATTCCATCCAGAACTGCTTCCCCTATGCTGACTGTTACCGGACCACTGAGCCAGCAGCCTCCAGG ENSRNOT00000032433
RatOligo01A05 ENSRNOT00000000003 AGAACATGGAGAGACTCTGTTACATAGTTAACTGAGGGCTGGTGCATCCTCCCTCGGGCTTAGTCCTTCC ENSRNOT00000000003
RatOligo01A07 ENSRNOT00000000004 CTTCCTAGTGTCTGTGCTACTGTTTATAGGGGTAAGGATGTGCAGAAGAGCCAGGGGGGTCTCTCTTGGT ENSRNOT00000000004
RatOligo01A08 ENSRNOT00000000153 XP_345568.2 PREDICTED: similar to solute carrier family 5 (sodium/glucose cotransporter), member 9 [Source:RefSeq_peptide_predicted;Acc:XP_345568] CTGTCAGAGAGTGTGTGGGGCCAGAGTTGGATGCTCCAATATTGCCTACCCCAAACTTGTTATGGCTCTC ENSRNOT00000000153
RatOligo01A09 ENSRNOT00000000005 CTTCTGGTATGGTTCCACACTTGTCCTAGATGAAGAAGAGTATACACCAGGGACACTGGTCCAGGTACTT ENSRNOT00000000005
RatOligo01A10 ENSRNOT00000000155 XP_341568.2 PREDICTED: similar to tumor endothelial marker 7-related precursor [Source:RefSeq_peptide_predicted;Acc:XP_341568] GCCAGCAATGAAGTTTCGAAGAGGATCGGGACATCCTGCCTATGCGGAAGTTGAACCAGTTGGAGAGAAA ENSRNOT00000000155
RatOligo01A11 ENSRNOT00000000006 XP_231003.2 PREDICTED: similar to zinc finger protein Sp5 [Source:RefSeq_peptide_predicted;Acc:XP_231003] GACGCACCAAAATAAGAAGCTCAAAGTCGCCGAGGCCGGGGTGAAGCGGGAGAACCCGCGGGACCTATGA ENSRNOT00000000006
RatOligo01A12 ENSRNOT00000000154 TGGTATCACCAATTCTGTAGTTCAGACATCTTTGGCAATGAGGCTGCCGTTCTGTGGGGACAATGTCATC ENSRNOT00000000154
RatOligo01A13 ENSRNOT00000035705 DCE1_RAT Glutamate decarboxylase 1 (EC 4.1.1.15) (Glutamate decarboxylase, 67 kDa isoform) (GAD-67) (67 kDa glutamic acid decarboxylase). [Source:Uniprot/SWISSPROT;Acc:P18088] AAGAGTCGTCTTGTGAGTGCCTTCAGGGAGAGGCAGGCCTCCAAGAACCTGCTTTCCTGTGAAAACAGTG ENSRNOT00000035705
RatOligo01A15 ENSRNOT00000035705 DCE1_RAT Glutamate decarboxylase 1 (EC 4.1.1.15) (Glutamate decarboxylase, 67 kDa isoform) (GAD-67) (67 kDa glutamic acid decarboxylase). [Source:Uniprot/SWISSPROT;Acc:P18088] ACAGAGGCCAAGTCATACTGAAAAAGCCCCATCCTGGTGAGGGAAGACAC ENSRNOT00000035705
RatOligo01A16 ENSRNOT00000000157 D64047 NM_022213 Phosphatidylinositol 3-kinase regulatory gamma subunit (PI3-kinase p85-gamma subunit) (PtdIns-3-kinase p85-gamma) (p55PIK). [Source:Uniprot/SWISSPROT;Acc:Q63789] GGACCTGCTTTATGGGAAGCCAGACGGTGCATTCTTAATTCGTGAGAGTAGCAAGAAAGGATGTTACGCT ENSRNOT00000000157
RatOligo01A17 ENSRNOT00000000007 M38350 DCE1_RAT Glutamate decarboxylase 1 (EC 4.1.1.15) (Glutamate decarboxylase, 67 kDa isoform) (GAD-67) (67 kDa glutamic acid decarboxylase). [Source:Uniprot/SWISSPROT;Acc:P18088] GTGTTGGTTGCTACGGTGATGGGGCTCAGAGCAGGACCAAAGCATGAGTG ENSRNOT00000000007
RatOligo01A19 ENSRNOT00000000008 M34445 DCE1_RAT Glutamate decarboxylase 1 (EC 4.1.1.15) (Glutamate decarboxylase, 67 kDa isoform) (GAD-67) (67 kDa glutamic acid decarboxylase). [Source:Uniprot/SWISSPROT;Acc:P18088] GTTTCCGAAGATCTCCGATACACTGACCAGTCCCACAAGTGTTTTTGAAGACATGAAACCCACACTGTGC ENSRNOT00000000008
RatOligo01A20 ENSRNOT00000000161 XP_233782.3 PREDICTED: similar to Mast2 protein [Source:RefSeq_peptide_predicted;Acc:XP_233782] TCTGTCGGACGAGTAACCGCAAGAGCTTGATTGTAACCTCTAGCACATCACCCACACTACCAAGGCCACA ENSRNOT00000000161
RatOligo01A21 ENSRNOT00000000009 XP_231005.2 PREDICTED: similar to paired-type homeodomain transcription factor [Source:RefSeq_peptide_predicted;Acc:XP_231005] AAGCCCCCTGGAAAAAACCGACTCTGAGAGTAGCAAAGGCAAGAAGCGGCGGAACAGAACCACCTTCACG ENSRNOT00000000009
RatOligo01A23 ENSRNOT00000000010 XP_575205.1 PREDICTED: similar to RIKEN cDNA 1700095F04 [Source:RefSeq_peptide_predicted;Acc:XP_575205] CTTGAAGTGGCTAAGGGACATATTGTTTCCCTTCCTTACCCTAGAAGTGGAGGATGTGCTCCCACACTAG ENSRNOT00000000010
RatOligo01A24 ENSRNOT00000000162 XP_214522.3 PREDICTED: similar to dnaJ-like protein [Source:RefSeq_peptide_predicted;Acc:XP_214522] GAAACTTCTGGAGTTGGCATTACAGCAATACCCAAAAGGAGCCTCTGACCGATGGGACAAAATCGCCAAA ENSRNOT00000000162
RatOligo01B03 ENSRNOT00000010553 NP_001026797.1 NULL TGAACACAATGCCTACCATCCCATGGAGTGGGCCATCAACGCCGCTACCCTGTCACAGTTCTACATCAAT ENSRNOT00000010553
RatOligo01B04 ENSRNOT00000000300 GCACATAAAAGCCAAACTGAGGCTGTTGGAGGTCCTCATCAGCAAGCAGGATGTGGCCAAAACAATTTGA ENSRNOT00000000300
RatOligo01B05 ENSRNOT00000000446 NP_001013216.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 (predicted) [Source:RefSeq_peptide;Acc:NP_001013216] TCATCCTCAGAAAACTCTCACAAGTCAAGTGATAAAGCAGATGAGACTCTAACACGTGAGCAAAAGGAAG ENSRNOT00000000446

Total number of rows: 22163

Table truncated, full table size 4071 Kbytes.




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Supplementary data files not provided
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