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Status
Public on Jan 01, 2014
Title
[BovGene-1_0-v1] Bovine Gene 1.0 Array [transcript (gene) version]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Bos taurus Manufacturer
Affymetrix
Manufacture protocol
See manufacturer's web site
Description
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
Submission date
Aug 28, 2013
Last update date
Jan 01, 2014
Contact name
David E Kerr
E-mail(s)
david.kerr@uvm.edu Organization name
University of Vermont
Department
Animal Science
Street address
500 Main Street 205 Terrill Hall
City
Burlington
State/province
VT
ZIP/Postal code
05401
Country
USA
Samples (88)
GSM1218197 , GSM1218198 , GSM1218199 , GSM1218200 , GSM1218201 , GSM1218202
GSM1218203 ,
GSM1218204 ,
GSM1218205 ,
GSM1218206 ,
GSM1218207 ,
GSM1218208 ,
GSM1218209 ,
GSM1218210 ,
GSM1218211 ,
GSM1218212 ,
GSM1218213 ,
GSM1218214 ,
GSM1218215 ,
GSM1218216 ,
GSM1218217 ,
GSM1218218 ,
GSM1218219 ,
GSM1218220 ,
GSM2467593 ,
GSM2467594 ,
GSM2467595 ,
GSM2467596 ,
GSM2467597 ,
GSM2467598 ,
GSM2467599 ,
GSM2467600 ,
GSM2467601 ,
GSM2467602 ,
GSM2467603 ,
GSM2467604 ,
GSM2467605 ,
GSM2467606 ,
GSM2467607 ,
GSM2467608 ,
GSM2467609 ,
GSM2467610 ,
GSM2467611 ,
GSM2467612 ,
GSM2467613 ,
GSM2467614 ,
GSM2467615 ,
GSM2467616 ,
GSM2467617 ,
GSM2467618 ,
GSM2467619 ,
GSM2467620 ,
GSM2467621 ,
GSM2467622 ,
GSM2467623 ,
GSM2467624 ,
GSM2467625 ,
GSM2467626 ,
GSM2467627 ,
GSM2467628 ,
GSM2467629 ,
GSM2467630 ,
GSM2467631 ,
GSM2467632 ,
GSM2467633 ,
GSM2467634 ,
GSM2467635 ,
GSM2467636 ,
GSM2467637 ,
GSM2467638 ,
GSM2467639 ,
GSM2467640 ,
GSM2467641 ,
GSM2468219 ,
GSM2468220 ,
GSM2468221 ,
GSM2468222 ,
GSM2468223 ,
GSM2468224 ,
GSM2468225 ,
GSM2468226 ,
GSM2468227 ,
GSM2468228 ,
GSM2468229 ,
GSM2468230 ,
GSM2468231 ,
GSM2468232 ,
GSM2468233 Series (3)
GSE50405 Role of epigenetic modifiers on the bovine fibroblast innate immune response
GSE94056 Differentiating Staphylococcus aureus from Escherichia coli mastitis: S. aureus triggers unbalanced immune-dampening and host cell invasion immediately after udder infection
GSE94069 Early temporal transcriptome responses of the bovine mid-cycle corpus luteum to prostaglandin F2 alpha indicates cytokine activation
Data table header descriptions ID transcript_cluster_id
gene_assignment Gene name(s) for each assigned mRNA for mRNAs that corresponds to known genes. (multipart)
ORF GenSymbol
SPOT_ID genomic location of the transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).
Data table ID gene_assignment ORF SPOT_ID 12902425
GeneID:100297779 // LOC100297779 // similar to X antigen family, member 5 // ---
LOC100297779 12902506
GeneID:100300877 // LOC100300877 // similar to X antigen family, member 5 // ---
LOC100300877 12910408
GeneID:781112 // LOC781112 // similar to P antigen family, member 3 (prostate as
LOC781112 12685446
GeneID:530116 // DAZL // deleted in azoospermia-like // --- // ---
DAZL 12748219
GeneID:654488 // OAS1 // 2',5'-oligoadenylate synthetase 1, 40/46kDa // --- // -
OAS1 12858341
GeneID:506864 // GTSF1 // gametocyte specific factor 1 // --- // ---
GTSF1 12905566
GeneID:613334 // FMR1NB // fragile X mental retardation 1 neighbor // --- // ---
FMR1NB 12678517
GeneID:280872 // MX1 // myxovirus (influenza virus) resistance 1, interferon-ind
MX1 12915421
gi:297469677 // LOC100336225 // PREDICTED: Bos taurus hypothetical protein LOC10
LOC100336225 12810631
GeneID:614703 // PSMA8 // proteasome (prosome, macropain) subunit, alpha type, 8
PSMA8 12905770
GeneID:616431 // LOC616431 // similar to H2B histone family, member W, testis-sp
LOC616431 12902653
GeneID:100336657 // LOC100336657 // cancer/testis antigen family 147, member B1-
LOC100336657 12717811
GeneID:100296695 // LOC100296695 // similar to X antigen family, member 5 // ---
LOC100296695 12842687
GeneID:281824 // HSD3B1 // hydroxy-delta-5-steroid dehydrogenase, 3 beta- and st
HSD3B1 12906231
GeneID:786942 // LOC786942 // similar to rCG61730 // --- // ---
LOC786942 12868502
GeneID:615896 // SYCP3 // synaptonemal complex protein 3 // --- // ---
SYCP3 12902461
GeneID:100299005 // LOC100299005 // similar to X antigen family, member 5 // ---
LOC100299005 12902431
GeneID:100297941 // LOC100297941 // similar to X antigen family, member 5 // ---
LOC100297941 12910237
GeneID:615884 // LOC615884 // similar to Mov10l1, Moloney leukemia virus 10-like
LOC615884 12745816
GeneID:506096 // HSPA4L // heat shock 70kDa protein 4-like // --- // ---
HSPA4L
26303 2218 Kbytes .Supplementary file Size Download File type/resource GPL17645_BovGene-1_0-st-v1.r4.f38.probesets2genes.csv.gz
1.2 Mb
(ftp) (http) CSV
GPL17645_BovGene-1_0-v1.cdf.gz
13.5 Mb
(ftp) (http) CDF
GPL17645_BovGene-1_0-v1.pgf.gz
10.0 Mb
(ftp) (http) PGF
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