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Platform GPL17646 Query DataSets for GPL17646
Status Public on Jan 01, 2016
Title Bifidobacterium array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Bifidobacterium
Manufacturer Agilent
Manufacture protocol http://www.genomics.agilent.com/en/Gene-Expression-Microarrays/?pgid=AG-PG-6
 
Description Array contains 4 Bifidobacterium species;

BBPR corresponds to B.bifidum PRL2010 (NC_014638.1)
Blon corresponds to B.longum subsp. infantis ATCC15697 (NC_017219.1)
BrMilk corresponds to B.breve 12L (project ID PRJNA214949, pending)
22L corresponds to B. adolescentis 22L (not in public database)
 
Submission date Aug 28, 2013
Last update date Jan 01, 2016
Contact name Marco Ventura
E-mail(s) marco.ventura@unipr.it
Phone +390521905666
Organization name University of Parma
Department Dept. Life Sciences
Lab Probiogenomics Lab.
Street address Viale delle Scienze 11/A
City Parma
ZIP/Postal code 43124
Country Italy
 
Samples (4) GSM1220345, GSM1220346, GSM1220347, GSM1220348
Series (1)
GSE50506 Molecular interaction of bifidobacteria with kefir grains

Data table header descriptions
ID name of spotted sequence designed from Agilent
SEQUENCE sequence of the spotted oligonucleotides
ORF gene corresponging to each sequence
Organism species full name each feature/sequence is derived from
SPOT_ID

Data table
ID SEQUENCE ORF Organism SPOT_ID
CUST_12463_PI428452295 GTACCTGAAATCGGCGATTTCGTCACGGTCACCGTCACACACGCTGGCCGCCATAATCTG Blon_0941 B.longum subsp. infantis ATCC15697
CUST_29617_PI428452295 ATCATGATGAGCCTGATTTCCATGACCTCATGGATCTGGTGGGTGTCCATCTGGCAGTTC B.adolescentis 22L 22L_0314
CUST_24557_PI428452295 GTCACCCTGGCCGGAGGACTGAAGGACCAGAACGGCCCCGCCACCCAGTCGGGCGTCTGG B.breve 12L BrMilk_1082
CUST_10983_PI428452295 GATGGTGTGGTTGAAGCTCCCCGTATTGTGTCGGGAAGCATGGTGAATAATTCATACATG Blon_0628 B.longum subsp. infantis ATCC15697
CUST_32282_PI428452295 CATACAACAAGTCTGATCTCGTCTCGAAGATCGCCCAGAAGTCCAACCTGACCAAGGCTC B.adolescentis 22L 22L_0012
CUST_32222_PI428452295 GACTTCACTTGGGAAGCCACCAACATGGTCGACGAACTCAAGGAGGCCATCAAGGCTTGA B.adolescentis 22L 22L_1490
CUST_22271_PI428452295 CAGGAGCATGAAATCAAGGGAGTCACTGCTGGTTCCACCATTCCCGTGTACCGCATTGCC B.breve 12L BrMilk_0589
CUST_5112_PI428452295 CAAGACCATCGCCTATCTCGGCGATTCGGCCAACAACATGGCCAACTCGTATCTGCTGGG BBPR_1157 B.bifidum PRL2010
CUST_33143_PI428452295 GAACATGCTGCTTGCCAAGCTCAAGGAATCCGACCGTCGTCTTGCCGCAATGTACGAGTC B.adolescentis 22L 22L_0081
CUST_4137_PI428452295 GACCCATCCGCAGGAGGGCAAGGCGCTTAGGGCCCGGATGCCCCACACTTTCTTCCTCGT BBPR_0940 B.bifidum PRL2010
CUST_19820_PI428452295 AAGAAAGCCACACGTGCCAAGCATCAGCGGAACCGATTGGCCATAGTCATCACCATTCTT B.breve 12L BrMilk_0064
CUST_27791_PI428452295 AAGAACGTGAGCTTCACCTACCCGGATTCGCGCGAGGCTATGCTGCAGGATATCAATTTC B.breve 12L BrMilk_1773
CUST_19725_PI428452295 GATCGAAGACTCTGCAGAACAACCTCAGATAATTTGTCTCTGTATCTCGACGAGGTCGAG B.breve 12L BrMilk_0045
CUST_11308_PI428452295 GAACATATCGAACGGTCCAGCCAGCGCATGACGGTTCTTGTTGAGGATCTGCTGTCTTTG Blon_0698 B.longum subsp. infantis ATCC15697
CUST_26029_PI428452295 CCATGCGAAGCTCATCGAGCGCGACTGGTACCGCATTATCACCGACCGCCTATCAGCAAG B.breve 12L BrMilk_1393
CUST_3713_PI428452295 CTGGAGACGTTTCGGCTTCCGTAACCTCCACATCGATGCGCGGTTGGGACATCGCGCATC BBPR_0839 B.bifidum PRL2010
CUST_24921_PI428452295 CTCGCCTGCATAGCAGCCCTCTGCTTGCCCGAGCGCAAAGGCCTCAATCTCGAAGACTGA B.breve 12L BrMilk_1160
CUST_3232_PI428452295 ATTTCGTCCCCTCCGAACATGGGGATGTCGTGATATGGGGCGTGGTCACGGGCAGTTTTC BBPR_0732 B.bifidum PRL2010
CUST_31657_PI428452295 CGAATGCCACCGCCACCTTCTCCGGCATGACTCTGGCCAACACCACACGCGAGAACCTGG B.adolescentis 22L 22L_1613
CUST_27603_PI428452295 TCAGCAAGTTGTATTCGCTTGATAGCAAACCTCCCATCACACATCAAGATCACATCGATA B.breve 12L BrMilk_1733

Total number of rows: 36186

Table truncated, full table size 4137 Kbytes.




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