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Platform GPL17776 Query DataSets for GPL17776
Status Public on Sep 30, 2013
Title Agilent-037369 Staphylococcus aureus 3K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Staphylococcus aureus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16037369 or 2537369.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Sep 26, 2013
Last update date Dec 18, 2013
Contact name Haipeng Sun
Organization name University of Science and Technology of China
Department School of Life Sciences
Street address Huangshan Road
City He Fei
State/province An Hui
ZIP/Postal code 230027
Country China
 
Samples (7) GSM1240416, GSM1240417, GSM1240418, GSM1240419, GSM1293405, GSM1293406 
Series (3)
GSE51197 Effect of different Two-component systems system deletion in S. aureus NCTC8325
GSE53432 Effect of TetR family regulator SAOUHSC_02897 deletion in S. aureus NCTC8325
GSE56283 Effect of SAOUHSC_02810 deletion in S. aureus NCTC8325

Data table header descriptions
ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE
(+)E1A_r60_1 (+)E1A_r60_1 pos
(+)E1A_r60_3 (+)E1A_r60_3 pos
(+)E1A_r60_a104 (+)E1A_r60_a104 pos
(+)E1A_r60_a107 (+)E1A_r60_a107 pos
(+)E1A_r60_a135 (+)E1A_r60_a135 pos
(+)E1A_r60_a20 (+)E1A_r60_a20 pos
(+)E1A_r60_a22 (+)E1A_r60_a22 pos
(+)E1A_r60_a97 (+)E1A_r60_a97 pos
(+)E1A_r60_n11 (+)E1A_r60_n11 pos
(+)E1A_r60_n9 (+)E1A_r60_n9 pos
(+)eQC-39 (+)eQC-39 pos
(+)eQC-40 (+)eQC-40 pos
(+)eQC-41 (+)eQC-41 pos
(+)eQC-42 (+)eQC-42 pos
(-)3xSLv1 (-)3xSLv1 neg
CUST_1000_PI427165228 CUST_1000_PI427165228 FALSE unmapped TACTGCTTTCAAACTTGCATAACGAAGATTTTTCGGAGCGTGGTGATGTCTTTATGGGTG
CUST_1001_PI427165228 CUST_1001_PI427165228 FALSE unmapped TCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCA
CUST_1002_PI427165228 CUST_1002_PI427165228 FALSE unmapped ATTATGTGTTTATTGATGACGGATGGGCGAAACATGGAACTTATTGCGTTGTCAGACGTA
CUST_1003_PI427165228 CUST_1003_PI427165228 FALSE unmapped TGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTGAAAAGAGAGGGAAGCTAGAA
CUST_1004_PI427165228 CUST_1004_PI427165228 FALSE unmapped CACAACGTTTATCAAGTTTACTAAATGTCGCAGGTTTCATAGTCGACGGCTACAATGGCT

Total number of rows: 2997

Table truncated, full table size 343 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL17776_037369_D_GEO_20111110.txt.gz 474.4 Kb (ftp)(http) TXT

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