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Platform GPL17790 Query DataSets for GPL17790
Status Public on May 13, 2014
Title Agilent-019727 CBF Synechocystis OW_AT 15K Expression array (Probe name version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Synechocystis sp. PCC 6803
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description 8x15K expression
Oligos by OligoWiz and eArray
trimmed Oligos
Tm matching

Arrays of this design have barcodes that begin with 16019727 or 2519727.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Names.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 17, 2013
Last update date May 15, 2014
Contact name Luis Lopez Maury
E-mail(s) llmaury@ibvf.csic.es
Organization name IBVF
Street address Av Americo Vespucio 49
City Sevilla
ZIP/Postal code 41092
Country Spain
 
Samples (44) GSM1244395, GSM1244396, GSM1244397, GSM1244398, GSM1244399, GSM1244400 
Series (2)
GSE51383 Genomic responses to arsenic in Synechocystis
GSE51671 Genomic responses to copper in Synechocystis

Data table header descriptions
ID Agilent Probe Name
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence
ORF Locus tag
SPOT_ID Spot identifier

Data table
ID CONTROL_TYPE GENE_SYMBOL ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE ORF SPOT_ID
GE_BrightCorner pos CONTROL
DarkCorner pos CONTROL
CBF_AT_2605_1241-1298 FALSE NT01SS2238|NA|CBF2605 chr1:1947608-1947551 alpha,alpha-trehalose-phosphate-synthase;GeneLoc:1948848-1947325;-Strand;ProbeLoc:1241-1298;absProbeLoc:1947608-1947551;Tm:81.14;Length:58;IdenticalProbe:CBF2605_1241-1298,CBF2604_1217-1274;CBF_AT_2605_1241-1298 AGGAGTATGTGGTGGCTAAAAATGGCGAAGAAGGAGTTCTGATCCTCTCGGAATTTGC
CBF_OW_3763_65-107 FALSE ssl1552|NA|CBF3763 chr1:2845008-2844966 hypothetical protein;GeneLoc:2845072-2844809;-Strand;IdenticalGene:ssl1552_2845072-2844809,NT01SS3246_2845072-2844809;ProbeLoc:65-107;absProbeLoc:2845008-2844966;Tm:81.1;Length:43;CBF_OW_3763_65-107 ACGACATCACGGGAGCTCGTCGGGAAGAGGCTCTGAAAAAAGC ssl1552
CBF_OW_3629_1154-1203 FALSE slr0207|NA|CBF3629 chr1:2744448-2744497 hypothetical protein;GeneLoc:2743295-2744917;+Strand;IdenticalGene:slr0207_2743295-2744917,NT01SS3137_2743295-2744917;ProbeLoc:1154-1203;absProbeLoc:2744448-2744497;Tm:81.1;Length:50;CBF_OW_3629_1154-1203 TACCAGCTATTCATATTCGTTCCGATGCAGTGCGCAAACATTTAGGCGGA slr0207
CBF_OW_1356_1068-1115 FALSE malK slr1224|NA|CBF1356 chr1:1027578-1027625 cytoplasmic membrane protein for maltose uptake;GeneLoc:1026511-1027737;+Strand;ProbeLoc:1068-1115;absProbeLoc:1027578-1027625;Tm:81.1;Length:48;IdenticalProbe:CBF1356_1068-1115,CBF1355_1086-1133;CBF_OW_1356_1068-1115 TATCTATGCCCATTTAGTGACAGAGCCGGATCTCACCATCCAAGCCCG slr1224
CBF_OW_3860_399-448 FALSE slr0511|NA|CBF3860 chr1:2922058-2922107 transposase;GeneLoc:2921660-2922439;+Strand;IdenticalGene:slr0511_2921660-2922439,NT01SS3329_2921660-2922439;ProbeLoc:399-448;absProbeLoc:2922058-2922107;Tm:81.1;Length:50;CBF_OW_3860_399-448 TACAATCCTCGTGGATACCATGGGATTACTTCTCGATGTTGTCGGTGCCC slr0511
CBF_AT_1237_741-800 FALSE phbC slr1830|NA|CBF1237 chr1:933897-933956 poly(3-hydroxyalkanoate) synthase;GeneLoc:933157-934293;+Strand;IdenticalGene:slr1830_933157-934293,NT01SS1059_933157-934293;ProbeLoc:741-800;absProbeLoc:933897-933956;Tm:80.37;Length:60;CBF_AT_1237_741-800 TCTTGATGTGCCCGATATTATGGGGGATGAAGCGAAATTGTTAAACTTTCTACGCATGGA slr1830
CBF_AT_0293_1305-1364 FALSE gltD sll1027|NA|CBF0293 chr1:220159-220100 NADH-glutamate synthase small subunit;GeneLoc:221463-219979;-Strand;IdenticalGene:sll1027_221463-219979,NT01SS0242_221463-219979;ProbeLoc:1305-1364;absProbeLoc:220159-220100;Tm:81.01;Length:60;CBF_AT_0293_1305-1364 TAAAGATGCCCGGGGCAATATTAAAGCTGAATACGGTCAGTATGAAACCAGTATTCCCGG sll1027
CBF_AT_3757_28-87 FALSE NT01SS3241|NA|CBF3757 chr1:2839602-2839661 hypothetical protein;GeneLoc:2839575-2839904;+Strand;ProbeLoc:28-87;absProbeLoc:2839602-2839661;Tm:81.17;Length:60;CBF_AT_3757_28-87 TTTTTGTTGGTTGCCACTGCCTTGCATAGCGAAGTTATTTGTTTTCCTCAACTACCCCTC
CBF_OW_0465_44-95 FALSE NT01SS0391|NA|CBF0465 chr1:347917-347968 hypothetical protein;GeneLoc:347874-348059;+Strand;ProbeLoc:44-95;absProbeLoc:347917-347968;Tm:81.1;Length:52;CBF_OW_0465_44-95 TCGGTGACTGTGCACTGTCAATACTAGCCTGGATCTACTGGGAAGGACTCCC
CBF_OW_4185_238-292 FALSE NT01SS3615|NA|CBF4185 chr1:3201239-3201185 hypothetical protein;GeneLoc:3201476-3200940;-Strand;ProbeLoc:238-292;absProbeLoc:3201239-3201185;Tm:81;Length:55;CBF_OW_4185_238-292 AGACCGAAAATGTTTGATCATCATGCTAGTCACGATTTCACGATGCTCTATGCCC
CBF_OW_0304_415-461 FALSE slr1774|NA|CBF0304 chr1:228357-228403 hypothetical protein;GeneLoc:227943-228812;+Strand;IdenticalGene:slr1774_227943-228812,NT01SS0252_227943-228812;ProbeLoc:415-461;absProbeLoc:228357-228403;Tm:81.2;Length:47;CBF_OW_0304_415-461 GATACCCGTCAGGGAGAACGCTCTAACCGCACTGATACCCGACAACA slr1774
CBF_AT_3541_407-466 FALSE sll0394|NA|CBF3541 chr1:2684418-2684359 hypothetical protein;GeneLoc:2684824-2684198;-Strand;IdenticalGene:sll0394_2684824-2684198,NT01SS3055_2684824-2684198;ProbeLoc:407-466;absProbeLoc:2684418-2684359;Tm:81.01;Length:60;CBF_AT_3541_407-466 ATCAATTGCAAATGAGCGCTGCTGACAGCAATGAAGTTATTACCACCATCGACTGTGAAG sll0394
CBF_AT_3116_825-882 FALSE leuA slr0186|NA|CBF3116 chr1:2339460-2339517 2-isopropylmalate synthase;GeneLoc:2338636-2340237;+Strand;IdenticalGene:slr0186_2338636-2340237,NT01SS2679_2338636-2340237;ProbeLoc:825-882;absProbeLoc:2339460-2339517;Tm:80.9;Length:58;CBF_AT_3116_825-882 GACCAACATTGATACCAAACATATTTACGCCACTTCCCGCTTGGTGTCGGAGTTAACG slr0186
CBF_AT_0326_830-889 FALSE malQ sll1676|NA|CBF0326 chr1:246190-246131 4-alpha-glucanotransferase;GeneLoc:247019-245502;-Strand;IdenticalGene:sll1676_247019-245502,NT01SS0270_247019-245502;ProbeLoc:830-889;absProbeLoc:246190-246131;Tm:81.07;Length:60;CBF_AT_0326_830-889 GCTTTGCCTGGTGGATTAAGCGTTTTAAAGCCAATCTGCAATATCTAGACATTGTCCGCA sll1676
CBF_OW_0272_956-997 FALSE slr1104|NA|CBF0272 chr1:203509-203550 hypothetical protein;GeneLoc:202554-204395;+Strand;IdenticalGene:slr1104_202554-204395,NT01SS0223_202554-204395;ProbeLoc:956-997;absProbeLoc:203509-203550;Tm:81.1;Length:42;CBF_OW_0272_956-997 CGGGGTCAGGAGAGGCGGATGACCATATAGAAACAGCGGTGG slr1104
CBF_AT_0868_117-176 FALSE slr1037|NA|CBF0868 chr1:667563-667622 regulatory components of sensory transduction system;GeneLoc:667447-667842;+Strand;IdenticalGene:slr1037_667447-667842,NT01SS0749_667447-667842;ProbeLoc:117-176;absProbeLoc:667563-667622;Tm:80.96;Length:60;CBF_AT_0868_117-176 TGGGGAAAAAGCCTTGGCTTTAGCAGTGGAACATCAACCCCAATTGGTTATTTTAGATGT slr1037
CBF_OW_4048_645-687 FALSE sll0777|NA|CBF4048 chr1:3081536-3081494 hypothetical protein;GeneLoc:3082180-3081263;-Strand;IdenticalGene:sll0777_3082180-3081263,NT01SS3499_3082180-3081263;ProbeLoc:645-687;absProbeLoc:3081536-3081494;Tm:81.2;Length:43;CBF_OW_4048_645-687 GGCAAGGTTTAGTGCCCCTCCCGGACACAGTGAACACCACACT sll0777
CBF_AT_4643_143-202 FALSE NT01SS4018|NA|CBF4643 chr1:3572927-3572986 hypothetical protein;GeneLoc:3572785-3573030;+Strand;ProbeLoc:143-202;absProbeLoc:3572927-3572986;Tm:80.98;Length:60;CBF_AT_4643_143-202 TATTTTTCCCTAGAATCTCCCACTGCCCCGATCGCCATGGAGACAGACATAGTACTAATG

Total number of rows: 15265

Table truncated, full table size 4680 Kbytes.




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Supplementary file Size Download File type/resource
GPL17790_019727_D_GEO_20080319.txt.gz 1.4 Mb (ftp)(http) TXT

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