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Status
Public on May 13, 2014
Title
Agilent-019727 CBF Synechocystis OW_AT 15K Expression array (Probe name version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Synechocystis sp. PCC 6803
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
8x15K expression Oligos by OligoWiz and eArray trimmed Oligos Tm matching Arrays of this design have barcodes that begin with 16019727 or 2519727. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Probe Names. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Oct 17, 2013
Last update date
May 15, 2014
Contact name
Luis Lopez Maury
E-mail(s)
llmaury@ibvf.csic.es
Organization name
IBVF
Street address
Av Americo Vespucio 49
City
Sevilla
ZIP/Postal code
41092
Country
Spain
Samples (44)
GSM1244395 , GSM1244396 , GSM1244397 , GSM1244398 , GSM1244399 , GSM1244400
GSM1244401 ,
GSM1244402 ,
GSM1244403 ,
GSM1244404 ,
GSM1244405 ,
GSM1244406 ,
GSM1244407 ,
GSM1244408 ,
GSM1244409 ,
GSM1244410 ,
GSM1244411 ,
GSM1244412 ,
GSM1244413 ,
GSM1244414 ,
GSM1244415 ,
GSM1244416 ,
GSM1244417 ,
GSM1244418 ,
GSM1244419 ,
GSM1244420 ,
GSM1244421 ,
GSM1244422 ,
GSM1250352 ,
GSM1250353 ,
GSM1250354 ,
GSM1250355 ,
GSM1250356 ,
GSM1250357 ,
GSM1250358 ,
GSM1250359 ,
GSM1250360 ,
GSM1250361 ,
GSM1250362 ,
GSM1250363 ,
GSM1250364 ,
GSM1250365 ,
GSM1250366 ,
GSM1250367
Series (2)
GSE51383
Genomic responses to arsenic in Synechocystis
GSE51671
Genomic responses to copper in Synechocystis
Data table header descriptions
ID
Agilent Probe Name
CONTROL_TYPE
Control type
GENE_SYMBOL
Gene Symbol
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
DESCRIPTION
Description
SEQUENCE
Sequence
ORF
Locus tag
SPOT_ID
Spot identifier
Data table
ID
CONTROL_TYPE
GENE_SYMBOL
ACCESSION_STRING
CHROMOSOMAL_LOCATION
DESCRIPTION
SEQUENCE
ORF
SPOT_ID
GE_BrightCorner
pos
CONTROL
DarkCorner
pos
CONTROL
CBF_AT_2605_1241-1298
FALSE
NT01SS2238|NA|CBF2605
chr1:1947608-1947551
alpha,alpha-trehalose-phosphate-synthase;GeneLoc:1948848-1947325;-Strand;ProbeLoc:1241-1298;absProbeLoc:1947608-1947551;Tm:81.14;Length:58;IdenticalProbe:CBF2605_1241-1298,CBF2604_1217-1274;CBF_AT_2605_1241-1298
AGGAGTATGTGGTGGCTAAAAATGGCGAAGAAGGAGTTCTGATCCTCTCGGAATTTGC
CBF_OW_3763_65-107
FALSE
ssl1552|NA|CBF3763
chr1:2845008-2844966
hypothetical protein;GeneLoc:2845072-2844809;-Strand;IdenticalGene:ssl1552_2845072-2844809,NT01SS3246_2845072-2844809;ProbeLoc:65-107;absProbeLoc:2845008-2844966;Tm:81.1;Length:43;CBF_OW_3763_65-107
ACGACATCACGGGAGCTCGTCGGGAAGAGGCTCTGAAAAAAGC
ssl1552
CBF_OW_3629_1154-1203
FALSE
slr0207|NA|CBF3629
chr1:2744448-2744497
hypothetical protein;GeneLoc:2743295-2744917;+Strand;IdenticalGene:slr0207_2743295-2744917,NT01SS3137_2743295-2744917;ProbeLoc:1154-1203;absProbeLoc:2744448-2744497;Tm:81.1;Length:50;CBF_OW_3629_1154-1203
TACCAGCTATTCATATTCGTTCCGATGCAGTGCGCAAACATTTAGGCGGA
slr0207
CBF_OW_1356_1068-1115
FALSE
malK
slr1224|NA|CBF1356
chr1:1027578-1027625
cytoplasmic membrane protein for maltose uptake;GeneLoc:1026511-1027737;+Strand;ProbeLoc:1068-1115;absProbeLoc:1027578-1027625;Tm:81.1;Length:48;IdenticalProbe:CBF1356_1068-1115,CBF1355_1086-1133;CBF_OW_1356_1068-1115
TATCTATGCCCATTTAGTGACAGAGCCGGATCTCACCATCCAAGCCCG
slr1224
CBF_OW_3860_399-448
FALSE
slr0511|NA|CBF3860
chr1:2922058-2922107
transposase;GeneLoc:2921660-2922439;+Strand;IdenticalGene:slr0511_2921660-2922439,NT01SS3329_2921660-2922439;ProbeLoc:399-448;absProbeLoc:2922058-2922107;Tm:81.1;Length:50;CBF_OW_3860_399-448
TACAATCCTCGTGGATACCATGGGATTACTTCTCGATGTTGTCGGTGCCC
slr0511
CBF_AT_1237_741-800
FALSE
phbC
slr1830|NA|CBF1237
chr1:933897-933956
poly(3-hydroxyalkanoate) synthase;GeneLoc:933157-934293;+Strand;IdenticalGene:slr1830_933157-934293,NT01SS1059_933157-934293;ProbeLoc:741-800;absProbeLoc:933897-933956;Tm:80.37;Length:60;CBF_AT_1237_741-800
TCTTGATGTGCCCGATATTATGGGGGATGAAGCGAAATTGTTAAACTTTCTACGCATGGA
slr1830
CBF_AT_0293_1305-1364
FALSE
gltD
sll1027|NA|CBF0293
chr1:220159-220100
NADH-glutamate synthase small subunit;GeneLoc:221463-219979;-Strand;IdenticalGene:sll1027_221463-219979,NT01SS0242_221463-219979;ProbeLoc:1305-1364;absProbeLoc:220159-220100;Tm:81.01;Length:60;CBF_AT_0293_1305-1364
TAAAGATGCCCGGGGCAATATTAAAGCTGAATACGGTCAGTATGAAACCAGTATTCCCGG
sll1027
CBF_AT_3757_28-87
FALSE
NT01SS3241|NA|CBF3757
chr1:2839602-2839661
hypothetical protein;GeneLoc:2839575-2839904;+Strand;ProbeLoc:28-87;absProbeLoc:2839602-2839661;Tm:81.17;Length:60;CBF_AT_3757_28-87
TTTTTGTTGGTTGCCACTGCCTTGCATAGCGAAGTTATTTGTTTTCCTCAACTACCCCTC
CBF_OW_0465_44-95
FALSE
NT01SS0391|NA|CBF0465
chr1:347917-347968
hypothetical protein;GeneLoc:347874-348059;+Strand;ProbeLoc:44-95;absProbeLoc:347917-347968;Tm:81.1;Length:52;CBF_OW_0465_44-95
TCGGTGACTGTGCACTGTCAATACTAGCCTGGATCTACTGGGAAGGACTCCC
CBF_OW_4185_238-292
FALSE
NT01SS3615|NA|CBF4185
chr1:3201239-3201185
hypothetical protein;GeneLoc:3201476-3200940;-Strand;ProbeLoc:238-292;absProbeLoc:3201239-3201185;Tm:81;Length:55;CBF_OW_4185_238-292
AGACCGAAAATGTTTGATCATCATGCTAGTCACGATTTCACGATGCTCTATGCCC
CBF_OW_0304_415-461
FALSE
slr1774|NA|CBF0304
chr1:228357-228403
hypothetical protein;GeneLoc:227943-228812;+Strand;IdenticalGene:slr1774_227943-228812,NT01SS0252_227943-228812;ProbeLoc:415-461;absProbeLoc:228357-228403;Tm:81.2;Length:47;CBF_OW_0304_415-461
GATACCCGTCAGGGAGAACGCTCTAACCGCACTGATACCCGACAACA
slr1774
CBF_AT_3541_407-466
FALSE
sll0394|NA|CBF3541
chr1:2684418-2684359
hypothetical protein;GeneLoc:2684824-2684198;-Strand;IdenticalGene:sll0394_2684824-2684198,NT01SS3055_2684824-2684198;ProbeLoc:407-466;absProbeLoc:2684418-2684359;Tm:81.01;Length:60;CBF_AT_3541_407-466
ATCAATTGCAAATGAGCGCTGCTGACAGCAATGAAGTTATTACCACCATCGACTGTGAAG
sll0394
CBF_AT_3116_825-882
FALSE
leuA
slr0186|NA|CBF3116
chr1:2339460-2339517
2-isopropylmalate synthase;GeneLoc:2338636-2340237;+Strand;IdenticalGene:slr0186_2338636-2340237,NT01SS2679_2338636-2340237;ProbeLoc:825-882;absProbeLoc:2339460-2339517;Tm:80.9;Length:58;CBF_AT_3116_825-882
GACCAACATTGATACCAAACATATTTACGCCACTTCCCGCTTGGTGTCGGAGTTAACG
slr0186
CBF_AT_0326_830-889
FALSE
malQ
sll1676|NA|CBF0326
chr1:246190-246131
4-alpha-glucanotransferase;GeneLoc:247019-245502;-Strand;IdenticalGene:sll1676_247019-245502,NT01SS0270_247019-245502;ProbeLoc:830-889;absProbeLoc:246190-246131;Tm:81.07;Length:60;CBF_AT_0326_830-889
GCTTTGCCTGGTGGATTAAGCGTTTTAAAGCCAATCTGCAATATCTAGACATTGTCCGCA
sll1676
CBF_OW_0272_956-997
FALSE
slr1104|NA|CBF0272
chr1:203509-203550
hypothetical protein;GeneLoc:202554-204395;+Strand;IdenticalGene:slr1104_202554-204395,NT01SS0223_202554-204395;ProbeLoc:956-997;absProbeLoc:203509-203550;Tm:81.1;Length:42;CBF_OW_0272_956-997
CGGGGTCAGGAGAGGCGGATGACCATATAGAAACAGCGGTGG
slr1104
CBF_AT_0868_117-176
FALSE
slr1037|NA|CBF0868
chr1:667563-667622
regulatory components of sensory transduction system;GeneLoc:667447-667842;+Strand;IdenticalGene:slr1037_667447-667842,NT01SS0749_667447-667842;ProbeLoc:117-176;absProbeLoc:667563-667622;Tm:80.96;Length:60;CBF_AT_0868_117-176
TGGGGAAAAAGCCTTGGCTTTAGCAGTGGAACATCAACCCCAATTGGTTATTTTAGATGT
slr1037
CBF_OW_4048_645-687
FALSE
sll0777|NA|CBF4048
chr1:3081536-3081494
hypothetical protein;GeneLoc:3082180-3081263;-Strand;IdenticalGene:sll0777_3082180-3081263,NT01SS3499_3082180-3081263;ProbeLoc:645-687;absProbeLoc:3081536-3081494;Tm:81.2;Length:43;CBF_OW_4048_645-687
GGCAAGGTTTAGTGCCCCTCCCGGACACAGTGAACACCACACT
sll0777
CBF_AT_4643_143-202
FALSE
NT01SS4018|NA|CBF4643
chr1:3572927-3572986
hypothetical protein;GeneLoc:3572785-3573030;+Strand;ProbeLoc:143-202;absProbeLoc:3572927-3572986;Tm:80.98;Length:60;CBF_AT_4643_143-202
TATTTTTCCCTAGAATCTCCCACTGCCCCGATCGCCATGGAGACAGACATAGTACTAATG
Total number of rows: 15265 Table truncated, full table size 4680 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL17790_019727_D_GEO_20080319.txt.gz
1.4 Mb
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