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Platform GPL17859 Query DataSets for GPL17859
Status Public on Oct 31, 2013
Title 091006_AD_ZM4_2_1M_exp_HX1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Manufacturer NimbleGen
Manufacture protocol NimbleGen
 
Description Genome sequence from refseq (main chromosome and 5 plasmids)
Analysis was not based on gene annotation except that only coding probes were used to build the model of how genomic control intensity affects tiling intensity
native array description file = 091006_AD_ZM4_2_1M_exp_HX1.ndf
 
Submission date Oct 29, 2013
Last update date Oct 31, 2013
Contact name Morgan N Price
E-mail(s) morgannprice@yahoo.com
Organization name Lawrence Berkeley Lab
Department Physical Biosciences Division
Lab Arkin group
Street address 1 Cyclotron Road Mailstop 977-152
City Berkeley
State/province CA
ZIP/Postal code 94720
Country USA
 
Samples (5) GSM1254295, GSM1254296, GSM1254297, GSM1254298, GSM1254299
Series (1)
GSE51870 High-resolution “tiling” expression data for Zymomonas mobilis ZM4

Data table header descriptions
ID
SEQUENCE Sequence of oligo
RANGE_GB refseq id (NC_nnnn) of scaffold
RANGE_START Chromosomal start position of oligo
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo
RANGE_STRAND

Data table
ID SEQUENCE RANGE_GB RANGE_START LENGTH RANGE_END RANGE_STRAND
PROBE_952919 GTATTCTCTTATTTGGTGCCGTGATCGGCTCTCTGGTCTGTGGTCGACTGTCTGCTTTTG NC_006526 296555 60 296496 -
PROBE_1903832 CGTCGGTCGCTCTTCGTAATTTGATTACTGGCCTTGGCGGCACCGCCTATCTTTTTATGC NC_006526 1833053 60 1833112 +
PROBE_1665364 TTACGGCTGGTATGATGGCTTCGGCCTTGCTTCTTTTGATTTTAGCGATTTTCTGGAAGG NC_006526 1302393 60 1302452 +
PROBE_1407695 ACAGAGAAATCGTCGAAATGGCGGGTCTGTTAAGAAATGGTGTGCCGATGGCAACGCCAG NC_006526 729057 60 729116 +
PROBE_1973827 GCGCACTTGCAGCATGTGCCAGGCGCTGCGCTTCCTGTTGTGGCATGGGCAACCAGATGT NC_006526 1999407 60 1999466 +
PROBE_298281 GCGCATTAGGAAAAAACGGCGTTATCGCGGCTGATAAAAAACGGGAAGGGGACAACAAAA NC_006526 1744987 60 1744928 -
PROBE_715486 CTTTAATTTTCCCCGATTGAACCCGCTTCACAAGGGCATCAATCGACAGATCTTCGGGCG NC_006526 814739 60 814680 -
PROBE_1417898 CAATTTTGAGTTGGCGCAAGATGAAATCGAGATTGGTGCTGTAGAAACCCGATAATCCTC NC_006526 753095 60 753154 +
PROBE_1702161 TGGATTATTTTGCAATTTATCCCAGACATGACTGATCTGTTTTTCAGTATCCTTTTCCAT NC_006526 1384649 60 1384708 +
PROBE_1339167 CAAATTTGGCATGTTTTACCGTGTCGCCAATCTTATATTGAGGGCTGTCCTTCTTCTTTA NC_006526 575544 60 575603 +
PROBE_1976503 TCGTCACCGCCGAATTCAAGATCAACTTTTTGCGCCCGGCGCTAGGCGCACGTTTCCTGG NC_006526 2005510 60 2005569 +
PROBE_371226 ATTCAGATCATGACGATCGAATTTCTGGGTCAATTCGGCAATAGCAACGTCACCCCGTTT NC_006526 1582595 60 1582536 -
PROBE_1632732 ATGAGCCATTTATTTTTTGGGAAGATTTAATTTTAAGGATGGTAGCGGAGGAGGGACTTG NC_006526 1230988 60 1231047 +
PROBE_1901656 TCTTATTGAATGCTTTAGGATTTCCAGTAGTCATTTTTATGGCAGTGAAGACTCTTATTA NC_006526 1827046 60 1827105 +
PROBE_29347 TTATCCGAGCCGTCGTGTTTTTGAGATCATTGAATAATTTACGCGTATGGGGCTGCATAA NC_013784 21661 60 21720 +
PROBE_393251 GCTGACAGTTGCCAGATCACGGGCGGCTTCACGCAAAGCTTCGGTAATAGAGAGCGGTCT NC_006526 1533029 60 1532970 -
PROBE_537775 TTTCCTAATCCGTTATAGCCCTATTTTAAGAATGTTACGTCATTATTAGGAAAGTTTTTG NC_006526 1201952 60 1201893 -
PROBE_1662351 GAGATTCTGCGGGCCCGCCCTTTCTAGCTAATGTGGCAGAGAAGGAAGACGCCTAGGCGT NC_006526 1296226 60 1296285 +
PROBE_1677015 TTGCTTTGATTCTGGCTTCGGCTGGCGGTGATGTCAGCAGGATTTCTGAAGAAGATCGCA NC_006526 1328122 60 1328181 +
PROBE_335689 TGATGTGTGGGTCTCCGGGAGCCGGTAAGTCATTATTGGCAGCCTGCCTTCCGGGTATCT NC_006526 1666048 60 1665989 -

Total number of rows: 1870443

Table truncated, full table size 190480 Kbytes.




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