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Platform GPL17934 Query DataSets for GPL17934
Status Public on Feb 01, 2014
Title Agilent-039425 Folsomia V5.1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Folsomia candida
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Folsomia candida 74K+ expression array with all probes in the right direction

Arrays of this design have barcodes that begin with 16039425 or 2539425.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Nov 14, 2013
Last update date Feb 01, 2014
Contact name Tjalf de Boer
E-mail(s) tjalf.deboer@microlifesolutions.nl
Organization name MicroLife Solutions
Street address Science Park 406
City Amsterdam
ZIP/Postal code 1098 XH
Country Netherlands
 
Samples (21) GSM1264627, GSM1264628, GSM1264629, GSM1264630, GSM1264631, GSM1264632 
Series (1)
GSE52393 INTEGRATING TRANSCRIPTOMICS INTO TRIAD-BASED SOIL QUALITY ASSESSMENT

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence
SPOT_ID Spot identifier

Data table
ID COL ROW NAME CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE SPOT_ID
1 532 340 GE_BrightCorner pos CONTROL
2 532 338 DarkCorner pos CONTROL
3 532 336 DarkCorner pos CONTROL
4 532 334 DarkCorner pos CONTROL
5 532 332 DarkCorner pos CONTROL
6 532 330 DarkCorner pos CONTROL
7 532 328 DarkCorner pos CONTROL
8 532 326 DarkCorner pos CONTROL
9 532 324 DarkCorner pos CONTROL
10 532 322 DarkCorner pos CONTROL
11 532 320 DarkCorner pos CONTROL
12 532 318 DarkCorner pos CONTROL
13 532 316 DarkCorner pos CONTROL
14 532 314 DarkCorner pos CONTROL
15 532 312 DarkCorner pos CONTROL
16 532 310 DarkCorner pos CONTROL
17 532 308 DarkCorner pos CONTROL
18 532 306 DarkCorner pos CONTROL
19 532 304 DarkCorner pos CONTROL
20 532 302 DarkCorner pos CONTROL

Total number of rows: 180880

Table truncated, full table size 19111 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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