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Platform GPL17936 Query DataSets for GPL17936
Status Public on Apr 03, 2014
Title Maize oligonucleotide array 1.5K version
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Zea mays
Manufacturer University of Hamburg
Manufacture protocol PRINTING OF THE OLIGONUCLEOTIDE MICROARRAYS
The oligonucleotides were synthesized by Ocimum Biosolutions (Ijsselstein, Netherlands) and printed on poly-L-lysine coated glass slides with a Microgrid II printer (BioRobotics, Boston, USA).
1. Add 15 uL of 3x SSC to each well of the 300 µM oligonucleotide set to make a 20 μM oligonucleotide solution.
2. Transfer onto an orbital shaker for 1 h at RT at 100 rpm. The oligonucleotides are now ready for printing.
3. The maize oligonucleotide microarrays are printed on poly-L-lysine coated glass slides (Menzel, Thermo Fisher Scientific) using microspot 2500 pins.
4. Printing conditions:
Microarray printer (Microgrid II printer, BioRobotics, Boston, USA). 55% relative humidity. We used microspot 2500 pins and spotted all oligos and controls (used negative controls: H300010599, H300013976, H300014151, H300016837; positive controls: Control_oligo-7, Control_oligo-12, MZ00023408, MZ00023618, MZ00023663 in two replicates.
IMMOBILIZATION OF THE OLIGONUCLEOTIDE ARRAY ELEMENTS
1. Rehydrate the microarray slide over 56 °C water for 2-3 seconds; snap-dry on a 65 °C heating block for 5 seconds. Repeat this step 3 times, examining the slides under a dissection microscope to verify complete re-hydration of all the spots. Crosslink the oligonucleotides to the slide surface by exposing the DNA-side of the microarray to UV irradiation. We employ a Stratalinker set at an energy level of 60 mJ. After crosslinking slides were once again dried on a 100 °C heating block.
2. Blocking of the slides was performed according to Diehl et al. (Nucleic Acids Research 2001, 29(7): e38). Therefore slides were incubated for 1 h in blocking solution (1 g succinic anhydride, 200 ml 1,2-Dichlorethane, 2.5 ml 1-Methylimidazole), then dipped twice in 1,2-Dichlorethane. At the end slides were placed for 2 min in boiling water and then briefly transferred to 98 % ethanol.
3. Air dry slides under a clean bench.
4. Store the slides in a light-proof box in a vacuum.
 
 
Submission date Nov 15, 2013
Last update date Apr 03, 2014
Contact name Stefan Scholten
E-mail(s) stefan.scholten@uni-hamburg.de
Phone 0049 40 42816329
Organization name University of Hamburg
Department Biocenter Klein Flottbek
Lab Developmental Biology and Biotechnology
Street address Ohnhorststrasse 18
City Hamburg
State/province Hamburg
ZIP/Postal code 22609
Country Germany
 
Samples (105) GSM1265616, GSM1265617, GSM1265618, GSM1265619, GSM1265620, GSM1265621 
Series (1)
GSE52411 Gene expression analysis of nine European maize (Zea mays L.) inbred lines and nine corresponding hybrids

Data table header descriptions
ID
Block The block number in which the oligo was spotted (4 total)
Row The row within each block that the oligo was spotted (20 total)
Column The column within each block that the oligo was spotted (20 total)
Vendor_ID The oligo ID assigned by Operon and received from maize oligonucleotide array platform GPL6438
SEQUENCE Sequence of the spotted oligo
Name The accession of the longest representative sequence that matches the oligo with 100 % identity over 100 % of the oligo sequence received from the file "remapping_version4_57452_fasta" of the "Maize Oligonucleotide Array Project" (http://www.maizearray.org) from the platform GPL6438. The sequence can be an Assembled Zea Mays (AZM) genomic sequence (eg. ZM4_13684), a GenBank entry (eg. BG319830), a TIGR Maize Gene Index entry (TC233604) or a Maize Repeat entry (e.g. ZRSgTERTOOT22542).
Match Sequence The sequence of the longest representative sequence that matches the oligo with 100 % identity over 100 % of the oligo sequence received from the file "remapping_version4_57452_fasta" of the "Maize Oligonucleotide Array Project" (http://www.maizearray.org) from the platform GPL6438.
Match Sequence length Length of match sequence oligo sequence is obtained from.
Match Sequence description Sequence descriptions of BLASTx results of the match sequence (e-value threshold 1e-3) performed by Blast2GO (version 2.4.8) (http://www.blast2go.org) (Götz et al., Nucleic Acids Research 2008, 36:3420-3435.) hiding descriptions, which extracts informative names.
Hit description Best BLASTx result
Hit ACC
E-value e-value of the best BLAST hit
Similarity
GO terms GO IDs associated to the match sequence

Data table
ID Block Row Column Vendor_ID SEQUENCE Name Match Sequence Match Sequence length Match Sequence description Hit description Hit ACC E-value Similarity GO terms
1 1 1 1 MZ00036978 CAAACTATCTGGACACTTGATGAGGAGCCTGAGGGATTTGATCTGATCTGATCCGATCCAGTGTGGTCTG BM333836 CGATACGAATTCAGCAACAATATATCAAAGCGTCTCCGTTCGGTTTTCCATCGGAACCGTCCAAAGCAAAAAGTAATACATACATCAAACAGCAGCAGCAGTCACGGCCTCCCAGGAGACAACAAAACACTACCAAGAGTTGATAGTAGCACACACTGTAGATTGCAAAATGTATTCCTTGGTTTCTGCTTCCCTCCCACCTTTACATTACATTGTGCCAGACCACACTGGATCGGATCAGATCAGATCAAATCCCTCAGGCTCCTCATCAAGTGTCCAGATAGTTTGCGGCCATCATAAGCTCCAGGGTTATCTCCGGTTCGATTGGAAACTCCGCTGTCTCCTTCCCACTGGAGTAATGGAGCGACCAATAGAAATACTGGCAGATCTTCTCGAGGATGTTGGTGGGGATCTCTGGGAAGCGGACCTCGCCCTGGCGCGTCTCAGAGAAGCCGCCTGGGGATGTGAGCATGTTGCGGAGGGTGTTGGAGACCATGGCGGCCTTCCTGTCAACAACGAATTCGAAGCCCTCGGCGCTGATG 542 LOC100283809 gi|226506916|ref|NP_001150179.1|LOC100283809 [Zea mays] >gi|195637350|gb|ACG38143.1| elongin C [Zea mays] NP_001150179 3.04E-40 100 0005515|0006511
2 1 1 2 MZ00038326 GTCCACATTGCAACCACTGCTCAGGAGAAGATGAAGCCGTGGAAGGAGACTTCCAGGAGTTCCAAGACTA TC307523 ACATAAATGAACATCATCGCATAGTGCTCGAATAATAGCATAAAAGAGTATTAACTTATTACATCATGATGTCATAGACATCCACATAGTCATCAACTCAACGGGTAAATCAAAGTGCTAAGCGAAACGCAGTACAGATAGGGCCTTCACAGGCAGCTGACTGGGGGTTGCCGCCAACCCACACCTAGAACTCGTCGTAGTCTTGGAACTCCTGGAAGTCTCCTTCCACGGCTTCATCTTCTCCTGAGCAGTGGTTGCAATGTGGACAACCTTCACCAAACAGATGCTCAGGGTCTTCCACTTTGTAGAACTCGAAGAGTTCGATCTCTTGGTCGCTGAAGCTTGACTGTCGATTCCTCGAAGCTCGGAAATGGATCACAGTCATGGCAACGACGGACGAGGCAATGGCGCGACGCGGTGGGCCAGGGCTGCTCCGGGCGAGGCGGTGATGGTGGCGAGGTCGAGTCCGGGCACAACGAGCTTAGCGCTGGCTCCCTGCTCAACGACGACCAGGCACAACTGTGAGGCGAGGCGAGGCACGACGCGACGGCGATGGTGAGCGTGTGGGCTGCGCAGTGGTGGGCCCAACACAAT 594 hypothetical protein LOC100275067 gi|226496625|ref|NP_001142729.1|hypothetical protein LOC100275067 [Zea mays] >gi|195608876|gb|ACG26268.1| hypothetical protein [Zea mays] NP_001142729 2.25E-19 74
3 1 1 3 MZ00038450 TGATGCATGTCAGCAATACAATAACCGACAGGACAAAAGAGAGAGATGGTATGCGGCTTAGAAACGTGGC CD946600 TAATGACACAAAAAAGGCGTCCGTTTAGAGGCCAGCCAGAGGTACAAGCGTTCTCCCGTGCATTACATTGCACAACACGAATGCTATAATATTGGCAGTATACTACTGCTGTTGCTTCTACGAATACTACGTCATCTCGAGAAGTAGCCAAGCTGCCACGTTTCTAAGCCGCATACCATCTCTCTCTTTTGTCCTGTCGGTTATTGTATTGCTGACATGCATCACCAATTCTAGACCCCATCGCCACAGCTGCAAGGCCATGTAGGCAGCAGTGGCATCAGCCAACCTTTTCCTCACTTGTACTCGAACGATGGTATCGGACTGCTGGGCGTGTCGAAGCTCTCCAAGATC 351 hypothetical protein LOC100279752 gi|226529933|ref|NP_001146182.1|hypothetical protein LOC100279752 [Zea mays] >gi|219886085|gb|ACL53417.1| unknown [Zea mays] NP_001146182 3.88E-03 91
4 1 1 4 MZ00038489 CAACCCCTAGTTGGCTGCCTATGAAGGCCGCATGTATCTACGTTTCATTTTCACATTTTGATTATTGTTA TC320996 TCGATTACATCATGATGTCTGAGACATCCACATAGTCTTTAACAATAATCAAAATGTGAAAATGAAACGTAGATACATGCGGCCTTCATAGGCAGCCAACTAGGGGTTGCCGCTAACCCACGCCTAAAACTCGTCGTACTCTTGGAACTCCTGGAAGTCTTCCTCCATGGCTTCATCTTCTCCTGAGCAGCGGTTGCAACATGGACAACCTTCACTAAACAGATGCTCAGGATCTTCAGCCTCGTAAAACTCGAAGAGCCTGATCACTTGGTCGCCAAAACTTGATCGTCGACTCCTTGAAGCTCAGGAATACATCGCAATCTGCGCACGACGAACCGTGCTCCTCCTCTCCTGTTGCTGCAGCGCCTGGGGAACTTCTCATCTGGGTAACTCCTTCATGCGCAGGAATAGAGTGAAGGGAACTGGCGTACGCGTAGGCGAGAAACATGGCGGCACGAGCTCGTGCCG 468 hypothetical protein LOC100280183 gi|226501990|ref|NP_001146587.1|hypothetical protein LOC100280183 [Zea mays] >gi|219887919|gb|ACL54334.1| unknown [Zea mays] NP_001146587 3.50E-12 82
5 1 1 5 MZ00043997 TCCGGTTGGCGATCGGTCATACATCTTTCTACCAAACGGAACTTTCCCGCTATAAAAAGCCTTTCAGCCT TC292393 AGGCTGAAAGGCTTTTTATAGCGGGAAAGTTCCGTTTGGTAGAAAGATGTATGACCGATCGCCAACCGGACGATCAATCGCCCAAACACGAATCACATACCAACCCCTAATGCATATGAAGCTATCATGAAAGGTAGTATCGGTATCCGTCGAAGCACCCATCATATCCTACACATCGTATCCGTAAGAAATACATTCAAAGGCATGTCACGTTGCCAGCATTTCATTTTGAAAACAGAAACATCACTGAGGCCGTGTTCTGGAGTAAAAGTTCTCTGGGTCCGGTAATAGCCACCCTGATGCATACTTCCTCCGCAGCAACGCGATGCAGAAGTTGTGATCAAAGCGGAAGCGTCCACGAAACATTAATTGGCCTGGGAAACTGAGAGCCACCATCACATTTTTGTAGCAGATTTCAGCACGTACCGGCTAGACATTTGCTACTCCAACGACATAGGCGTTCCAAGCATCTCCTTGGTTGAAATGCTGCGATTCTTCGTACTTCACGTCCCGGTTGGCGTTATACTCCTTGGCGTTTCCACCTGACTGGGTATTTGGCATCTCCCTCATCCAAACGTGGACCCACTTGAATCCAGCCTCCTCCAAGCAGTCCTTGATCTCCGGAATCGACCATAGGCGCCAATGGTATGTGAAAGCATATCGCATCATCTGTTTCTTTCCGCCTTGAAAGTGGAGACTGATCCTTGTTTGGCGACTGATGATATCAAACTCATCTTGCTCCCAGAAATACGTGAAGCTGGGGAATTTCCGCTGGAGACGTAACTTGCGTTCAGATGATATGCCACCATATACATCCATTACAAATATACCACCTCTTTCCGAGAGCACACTGCGTACATGCCTGAAATATAAAACCAAGTCCTTTCTACTATGCAGGCAACAGCAGCTGTAGTTGAATGCACAGATAATATCCCTTGCAGGAAAATCTGCCTCTGACATGGTCAGATTGGCTAAGCACTTCGAGTCAGCAAGACCCATCTGCTTGCAACTGTTACTTCCTGTGCCATTGTTGCTGTTCAAATCTAGACCATGCACAAGATTAGTAAACTTTTGCTTGACAAGACGGGATTCCATTGGTTGTAGAACATTTCCATGGAAAAGCAACATTCTTGAATACCCATCAGCTCCAATCTTGCTTAGGTTGTTTTCAAGGCACCACTCAAGTGACTCAAGATCCAAGTCTAAGCCAATTGCTGTCCTTCTTGCATCAGTACGGATCCACTCGGTGCTGAGGAGGGCCGTGCCACAGAAATCCTCCTGCAGGTGGAGAGGGGCGCGCCCGCCGACATACATCAGGAAGAACTTCTGCAAGTAGCTGATGTCCCCCTTCGGCGACTGCACGGAGAGCTGGTATAGGTGAAACTTGGAAGGCATTGATCCTTGCCATTGGTCCTGCTCGCCTGCTTCCGTATCCCTCTCTGGTTCGTCCTCCGCTGTTGCTTCGCTGGTGTCGTCGTTGTCTTCAGAGGATTCCTCGTTTTGGCGCGGCGTCGCATCGTAGGCTGACGAAGGTAAGTCGTAGTCGTCCTCGTCGCAGAAGTGCGACGCCCGCCGGCCGCGGCCCTGCCGGTGCGATTCCCTCGGTTTCTTTCCGCTTTTGCCCATCGATTTTGGGTCTGAAATCTGGAGACAAAGAGCAGCGCTTTATTTGGAAACTGGAGATAGTAAGCAGAACTGGACAATCAAGGTTTTGCAAAACAGCTTGCAGCCCGGG 1735 hypothetical protein SORBIDRAFT_03g040470 [Sorghum bicolor] gi|242055037|ref|XP_002456664.1|hypothetical protein SORBIDRAFT_03g040470 [Sorghum bicolor] >gi|241928639|gb|EES01784.1| hypothetical protein SORBIDRAFT_03g040470 [Sorghum bicolor] XP_002456664 0.0 94 0003674|0000815
6 1 1 6 MZ00044013 AGGTCGTCTCCTCCAAGATCCGAACCCCAATGCTAGTGAGAGTGGAGGCAGCACATGAAACCAACATGGA TC311619 AAAATCCAAAAATAATGCACCACATATGATTCATGTAAAGTTTAATTTGAATACCATATAATATCCATCGAAGCTAATTCATCCATCATCACATCATATAAGGTTGCCTCTATTCACACATATAGATAGACAATATAATATAAAAATGGAATACAAGTCTCTTGGTTAGGAACTTCGGCACTAGAATAAATTACGAGTTTAACTCTTTTTTCACAAGCTTCATGTGGAATGCCATTTCATTTTTCTTCTCCATGTTGGTTTCATGTGCTGCCTCCACTCTCACTAGCATTGGGGTTCGGATCTTGGAGGAGACGACCTTGTACTGGATCTTGGAGAAGACCATGTACTAGGTCTTGGAGACAACATTGTAATCGTGCCACGGAAGACGACGGTGGAGGACAGCAAACTGAGGGCAGAGATGGCGGTGGAGGACGACAAATCTGAGACGATGGCGGTGGTGGAGGGCACTGTCGCCTCACGTATCGCTCGCGATTGCATCGAGGAAGGACGACGATGGAGCGGCGGTAGAGCGGATGGCATTAGTGTGGACGACGATGGAGCGGC 564 unknown [Zea mays] gi|194696850|gb|ACF82509.1|unknown [Zea mays] ACF82509 1.44E-14 100
7 1 1 7 MZ00044018 CCGAACCCTATCTTTGTAACCATGGATAATGGATAGCATTCTTACAGAATGCAACTTGCATGGCTTTATC TC260456 CACATACAACTTCCCACAGGAGACCCGTGGCGCGGCGTCTCCCATCCCCCGCCCCCAAATTTGTTGCGGCGGGAGAGCCGGAGAGGAGGCAGCTCCACAGAAACAGAGAGCGCATAACCGGCGGCGTTGGCGGCGATGAGGATCGAGGAGGTGCAGTCGACCTCGAAGAAGCAGCGCATCGCCACCCACACCCACATCAAGGGACTCGGCCTCGACGCCAATGGGATGGCGATTGCGTTGGCGGCGGGGTTCGTGGGCCAGGCGGCGGCGCGCGAGGCGGCCGGGCTGGCGGTCGACATGATTCGCCAGAAGAAGATGGCCGGCCGCGCGGTGCTCCTTGCGGGTCCGCCCGCCACGGGCAAGACGGCGCTAGCGCTCGGCATAGCCCAGGAGCTCGGCAGCAAGGTCCCTTTCTGTCCTATGGTAGGATCAGAAGTGTACTCCTCGGAGGTCAAGAAAACTGAGGTGCTGATGGAAAATTTCCGTAGAGCTATAGGTTTGCGTATAAAGGAAAACAAAGAGGTTTATGAAGGAGAGGTTACTGAACTTTCCCCAGAAGAGGCTGAGAGTACAACTGGTGGATATGCAAAAAGCATTAGCCATGTAATCATCAGCTTAAAGACTGTTAAAGGGACTAAGCAACTGAAGTTAGATTCTTCAATTTATGATGCTCTGATCAAGGAAAAGGTGGCAGTGGGTGATGTTATATACATCGAAGCAAATAGTGGAGCAGTGAAAAGAGTTGGTAGATGTGATTCTTTTGCTACAGAATACGATCTTGAAGCTGAAGAGTATGTTCCTATCCCCAAAGGTGAAGTCCATAAGAAAAAAGAAATTGTGCAGGATGTCACACTTCATGACCTTGATGCAGCAAATGCTCAGCCACAAGGTGGCCAAGATATTTTGTCCCTTATGGGCCAGATGATGAAACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAGGTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGGTCCACATGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAGAGCCCATTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAGGCTGGTGATTATTCGGACAGAGACATATGGCCCTACTGAGATGATACAGATATTGGCTATCCGAGCACAAGTGGAGGACATTGATATGGATGAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTAAGACATGCTATTCAATTGATATCACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATATGCAAGGCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCTCGGCTGCTCCAGGAGCAACAAGAAAGATACATCACCTAGATTTGGATCACCTGTCGTGGAAGTCTCGAAGAGAATGTAGTTGCCAGCTCGAAAGTCATCTAGTGAATTGATCTGCTTCACAGGTCTTGGAGCGAGCACATTTCGGGGGGGACGGCTTGAATTTTGCAGTGCCTGCTTGTGTTAGTCTCCAGAGAAGACTTGGTACCGGCATATTGCCTGTTCACGCACTGTTCGCTGATTAGATTGGTCACCGGTGCAGGAATTGCCGTGTGTGTTTTTTATCTTGCTCATCGGTGTCCGGAATCTGTGCCTCCACGGGTTGTATTGGCCCGAACCCTATCTTTGTAACCATGGATAATGGATAGCATTCTTACAGAATGCAACTTGCATGGCTTTATC 1863 rvb1-like protein gi|212274341|ref|NP_001130525.1|hypothetical protein LOC100191624 [Zea mays] >gi|194689382|gb|ACF78775.1| unknown [Zea mays] >gi|224031033|gb|ACN34592.1| unknown [Zea mays] NP_001130525 0.0 100 0005524|0000166|0017111|0003678|0005634|0004386|0048507|0005515|0005730|0005730
8 1 1 8 MZ00044058 CTTGATTCTGCCAGGTCCTCTGCTGTGTGTACACTTTATATGCTTAAGCGCCAACATTTAAGTATCAATT TC209441 GCAAAAACAATTAGAAATACACCATGATGAGGAGAGGAGGGTCCAGCGATCTCCATCCCAGGACCTCAATAACATAAAAGCAAAACCATTCAATTGATACTTAAATGTTGGCGCTTAAGCATATAAAGTGTACACACAGCAGAGGACCTGGCAGAATCAAGCAACAGAACATATCCAAATGATAAGTGCATGCAACAAGGTCTGCAGATAGCCATTTCTTCGATAGTTCCGTGCTTCATCCATGTATTTGTTCTCAGAGCTCCCAGGACACAAGACAGAAACGTCGATGATTAGACAAGAGAAACCCAAATTGTATTTTACAGTGTAGATGCTAAGTTCAATATCAAGAGGAATCAGCATCTTATGTCACTTGCCAGTGATAAATGGATGGCTAAGTGCTTGTGATACGGTTATCCTCTTTTCTGGATCTAATATAAACATTTTATCAAGAAGATCTTTAAAACTGGATAGCATTTTTGGATCCTCGCCAGGAGAGTTCAAAATCAAAAAACCGACATCCTTTGGTTTAATGTTCAAAATTAACCTTCTCACAGCCGTTTTTGTCACAGGATCCTCCTCGGTAGCATGAAAATTG 595 protein kinase family protein gi|238014688|gb|ACR38379.1|unknown [Zea mays] ACR38379 2.81E-30 100 0009536|0005524|0004672|0006468|0004674|0005634|0005737
9 1 1 9 MZ00044236 GACTGTTGCGTGGAAATTTTAGATAGGTGGAAGTGGAACCCTCCGATTTGTCTTGCTACCTGTGTAATTA TC251789 GGTGGACGACGGGGCGGCCGACAGCATGGAGGAAGTGGTGAACGACATACTGCAAGAAGTCGGCCCCGCCAAGGCCGGCAAGATCAGCTCCGAGGAGTTTGTGGCGATGATGAAGACCGGTTCGGCCTGGAGAAAGGCGTCCCGGCCCTCCTCGAGAGGGAGGTTCAACAGCCTCAGCATGAAGCTTATAAAGGACGGGTCGGTAAAGTTGGGTGTCGAGTGAAAACCGCCCCGACGCTCGTTCTTGTGTGTGTGTGTGTGTGGTGTGTGTGCATGTAGTTTTAGGCCCTTGGCCCCCTAAGCAGAACGAANCTGTAGGCCTTTTTTTTTGGTCCCCTCGTGACTGTTGCGTGGAAATTTTAGATAGGTGGAAGTGGAACCCTCCGATTTGTCTTGCTACCTGTGTAATTAGCTATCCCAGTCTCGCTGCCAGGCCCTGGGCC 443 calcium-dependent protein kinase gi|223950215|gb|ACN29191.1|unknown [Zea mays] ACN29191 3.17E-21 89 0016301|0005524|0004672|0005509|0006468|0004674|0016740|0000166
10 1 1 10 MZ00044239 TATGTAAAAATTCTGGCGTCCAGCTGGGTAATGCAGACTTAGCCTGATGAATGTTGTTGCGTAGTTTGTA TC319874 ATCACACTCGCACTGTGTGTATCAGAATTCAAAACATCATCTTACAGCACTAATAATGGATGCTACAAACTACGCAACAACATTCATCAGGCTAAGTCTGCATTACCCAGCTGGACGCCAGAATTTTTACATAAACGTATAGAAGTCCTGAACACAGTATTGTACAAACGACCGCGTCAGCGCCACCCCTCATCGGTGCTTGTGGGTCTGAAGTCTCAACACACATGCATGTCATTCTATCATCGTCTAAGGAAGACGAAAAGCGAGCCTCTGGACCCTCTCCCTAGCCTGATCTTCTCGTCGACATAGGTGATCTCCAGCTTGACTTCGCTCTCGCCACCGTACTGAAACCCCAAGGAGCCGACCTTCAGTTCCGGCGCTTCAAACACGACCTGAATCCATTTACTGTCCAGCACATTCAGCTTACCTTTCAATGACACTGCG 444 protein gi|226509420|ref|NP_001151990.1|PAP fibrillin family protein [Zea mays] >gi|195636288|gb|ACG37612.1| PAP fibrillin family protein [Zea mays] >gi|195651635|gb|ACG45285.1| PAP fibrillin family protein [Zea mays] NP_001151990 8.02E-25 100 0005198|0009536|0009941|0009507
11 1 1 11 MZ00044313 ACATGTTATTCCTACATGTTCTTGGTCGATCTGTCGCTACACACATGGTTTGTGCAGACATCAATTAGTT TC315047 CACACCATGTGATGCGGGAGGAGCCTGTTCCGCCTCTCATCCCCCTACTTCTTCCAAGATGCAATCATGCTGCCCCAAGCTCCTCGGGCCCTCGGCCGCCATGATTGCCTCACCGCCTCTCAAGAGTCGCCTCCACCTACTTCCAAGAGGAAGAGGCCGGAGAAGCTATAGTCCGTGAAGAAATCAAGCGGAGGGGCGGCGGTGTAGGAGGGGCCGGCGGAGGAGAGAGAGGGCCGGGGGAGGTGACAGAAAGCTAGAGAGAGAGATGCATGATGGAGCATGATGATGGCGTGGTTGATCTCTTCGATCTAGCACTTCTATCATTCGAGTCAAGAAGCCATCATCAGATCGGTGCAGTCCTCCCTCCTCCTCCTCCTTCCAGCTCCTCTTTATCAGCTTCTCTGTAACGCTGCGCCGCCATGGCTTTGGGGAATCAAGCGCCTTGGTCCGAAGAAATCCGTCTTCTTTTCCTAGCTAGGATCTACGTACTTGTGCAAGAGTATGTCATGCATGCTACGCTACATGTTATTCCTACATGTTCTTGGTCGATCTGTCGCTACACACATGGTTTGTGCAGACATCAATTAGTTAATATTCGTCTGTCTTGATTGATTTGTTTCGACACCACTCTTTGATCCGGAGTTTGGTTCATGTAATACTATTTCATTAGATATGTGGATTTCTTCTTTGAGCTGAGCGTTTGACGCTGTGTGTGTGTGTGTTTCATGATTGATTCATGATCCGGAATATATACGGCCCATAACT 765 hypothetical protein [Zea mays] gi|195617788|gb|ACG30724.1|hypothetical protein [Zea mays] ACG30724 2.89E-14 100
12 1 1 12 MZ00044652 GCCGTGGCGGCTTAGTCCACGCACCAAACAGCCCCTAGGTTTAGGTATGTCATCTAGATATATCTAGTGA TC333096 ACTCGAATCGAATGTGAATCATTACCGTTACAATTTACGTTACATTTCGTGAACCAAACAGCACGACTGATTACTGAACAATTCATCAGCCACAGTTCATAAACTGTCATAATAATAATTTCCTCGCCGCGACAAACCAGTATGCAGGCTGGAAAGAGGATTCAACTCATTGAACATGAATCATGTACATCAACAAACACATGGCATATAAATCCTGGAAAGAGCTCCCCCATGTGCGATAAAGTAGACAGACAAAAAACCCCCACGCTTCATCACTTCATAATAGCCATGGTTAAGTCTGAAACAGCGCAGTAAGCGCCGGAAACAGAGGAACAAGTGTCATTTACAACCTGATCAACTGACTGAACTGATCACAGGTCACACGCACAGCAGATGCTGTGGAGAGCATTATCCAGACCAGGACCTAGATCATATTTAGCACTATGCAACAGCATGGCTGAGTGATGAGCATCTATATAATCCACATTAAATCAAAGGACAGATTTCGGTATGCCTTCTGACTTCTGGATCCCCCGTGTGTCACTCATGTTCCACAGAAGCTGAATGTACCCTTGGAAAGAACAGGTACATGTTGAATTCTCACTAGGGCACTAGGCATACTGCAGAGTCCAAGTAACCATGGCTATTAACTAGGCCAAGAACACGCTTGTCACTAGATATATCTAGATGACATACCTAAACCTAGGGGCTGTTTGGTGCGTGGACTAAGCCGCCACGGCGCACCATAGTTTTCCCGCCGCAGGTGTGGCGGCCGATTCGGGCGCCGCAGCTTAGGCACGCCGTGGCGCCGCACGCGCCGTACCAAACTGGCCCCTAAAGTTGTAGACAAGTGAGTCACAAAAAAACAGCTAAAAGTAAGAGGGGGCATCATTTGCCACCCATGTCGAGATGGCATAGAGGATGCGGCCTTTCCATCCCTGCAAGAGCCAGTGGTGATCAATATCGATCACAAAGTCCTTGTGGTATAAATCCCTGACCTTGTTCCGCACTACCTGCACGACATCAGGGTTCAGCGGCTGCTGCTTCAAGCCTGCTCGTTGATTCCGCACCTGCCATTGCTTGTACGTCTCAGGGCGCTCCACCCGATCTGTGCCCTCGCACGCGATGACATTCAGGGCAGCCCGCCCGAAAAGGTTCTCCTCAATCAGCATCCTCTGGTTGCTGTCTCTTGGAGTGGTCGTGTCCAGAGCG 1212 gras family transcription factor containing expressed gi|242083886|ref|XP_002442368.1|hypothetical protein SORBIDRAFT_08g018940 [Sorghum bicolor] >gi|241943061|gb|EES16206.1| hypothetical protein SORBIDRAFT_08g018940 [Sorghum bicolor] XP_002442368 6.06E-54 98 0006355|0000635
13 1 2 1 H300016837 TCCAGCTTGGTCTGTCTCCCCACCTCTACCAGCATCTGCTGAGCTATGAGCCAAACCAGGGATTTACAGG NA NA NA NA NA NA NA NA
14 1 2 2 Control_oligo-7 ATATCTGGACGCACCCATGCTGTAAAGCTCAAAAATCTCTCTGCAATGGAAGTGAACATTGTCCGCCCTT NA NA NA gi|6695907 NA NA NA NA
15 1 2 3 MZ00001462 AGCCTAAATAAGTAGTTGGTCGATTCAATCTAATGTGGCCCTGTTATCTCATATTGCTATGGGCCCTGAT AW288944 ATCATATTTCATCAAACTACCATTAAATAGAGTGCAATGTACAGTACCGAAAGGACAACANAAATCAGGGCCCATAGCAATATGAGATAACAGGGCCACATTAGATTGAATCGACCAACTACTTATTTAGGCTAAAGAGAAGATGATGGAGAGCATTGGTCTCATCTGCTCCTTTTTGCAGATCATTAATCTTTTATAACTCCTTAACCCTTGATTTTTCTGATTCTTCTACCTTCTTCTTGAGGGCATCTAACTGAGCTCTAACTTCTAATGAGTTTTGCTTCTCTGATTCAAGCTCTGCCACACGTGTAGGATCACCACCATTGCCGCTTTTATTTGTGGCAGGTAAAGACCAATATTTTGAAGAAATTTTGATGAAGCCAACACTTGAGCAACTGCTTCTATAGGGGTCTTAGATTCTTTTCCTTCTACTCCAGGCTCAGCCACAAGTGCTTTCTTCATTGNGTCAATGGCTTCCTTTATAGGCTCATGAAAACTA 499 unknown [Zea mays] gi|223950055|gb|ACN29111.1|unknown [Zea mays] ACN29111 9.58E-29 86
16 1 2 4 MZ00015945 ATGAACTGCGATCTATGTGTAACCAGGAGTGTGAGGGCAGTTAGTAGATAGGCTTGGACGGTTCTTTTGC DV942799 CATAATAATGTGTCCTAGCATTACACATAATATCAAGTTTAAGGCTTCCACAAAATCTGCATGTTCAAGCAAAATCCGCTGACATACTTAGACGACATTTCATTGTTTGATGTAGTTCAAGCAAAAGAACCGTCCAAGCCTATCTACTAACTGCCCTCACACTCCTGGTTACACATAGATCGCAGTTCATTGTTCAATGTGGTTCAAGCAAAAGAACCCTCCAAGCCTACCTACCAACTGCCCTCACACTCCTAGGAACTTTTCACTGACGAAATTGCGAGCCCAGATTAACTTGTGGTCGAATGACAACTTGTTGAAGGCTCTAGCAATGTGAGGGTGCGCCACCAGATAATTGAAATACAGAGATATGTGGGTCTGCTCAAAACCTGAAAGGTTTATCAAACTATAAAAAGATCATCTGGCACATCAGTGTCCCCTGTGGCAACCTTCTCAGTAGCATTGGATAAGGTATCCCCGACACTTTTGAATGCAGCAATCAACCCCTCCTCTTCACTATAACGTTTTTTGTCTTCTTCCTGATCTTGCTTGTAGAAGATGTTGTGGCATTATCATCACAAGCTAGATATATAGAGAGATATACTGTATTATAGCAGTGTGTGTCTCTTTTCTAATCAGTACTCCAACTCCAAATTAAAATCAGCATTCAAACTATGTACACCAAGCTAGGGTGGATATATATTCCTCATCAGCAAACTCATTGTCG 724 transposon en spm sub-class gi|293333796|ref|NP_001169845.1|hypothetical protein LOC100383737 [Zea mays] >gi|224031965|gb|ACN35058.1| unknown [Zea mays] NP_001169845 4.95E-26 92 0009536
17 1 2 5 MZ00024013 GGCTACACTCACATGTGAGATTTGAATAAGTCCTGCAGCCTCAGGGCTCAGCTAGCACAGCACAGCCCAC TC315827 AAAAAAAAGGGTATCTGTGGGCTGTGCTGTGCTAGCTGAGCCCTGAGGCTGCAGGACTTATTCAAATCTCACATGTGAGTGTAGCCACGTACAGATATCACAATCAGAAAACCGAATATATCATGTAGTGTAGTCACGTATGTAGTATAACATCTGTAGCAGAACATTTCTCAATCATGACCAGAGCTCCAGAAGAACCTTCACGATGACACGGAATTTTACATGGAACGGGAGCGTCTCAGATCTTGCTGGCGAACTGGAGGCCATCCTTCTTGAGCTCCTCGAGGTTAGCGACCGGCGGCTGGGTTTTCGCCACCTTGGCAATGGCCTTGTTCTCGTCCGGTGACCCGCCCTCCAGGAAGGCGCCCAAGACCTTGCCGTCCTTGATCCAGTACGAGCCGAACTTGGGCTTGCTGGAGGTGGGGTCACTGTCGCCAAACAGGATGGTTTCGCCCACGTTGTCGCCGTAGAATTGCCACGCCAGGTCGAATGATCGGGAGTAGAAGTATGGCAGGTAGTCATACTCCGGAACTGGTTCACCGGACTCTTTGCCCTTGATCGCCTTTACAGCCTGCTCTGCAGACTTTCTAGAATGGTCAACATGTTCCACTCTCCTCAACTCATTGTACATCTTCAAAGGGAAGGTAGCCACATCACCAATGGCATATACTCCAGGAACGCTTGTTTCAAAGGAAGCGTCAGTCTTGATTCCACCCTTCTCCTCAGCAACTTGACCCTTGAAGAGAGTAGTCAATGGTCTGCCTCCAACACCGACAACAACAATATCGGCTTCAAGTACTGTGCCATCCTTTAGCTTAACTGCAGTGACATCACCATTGGCATCAGCATCAAAACCAACAGCTAGCGTGCCCTTCAAGATCTTTACACCTTTGTTAGTATAGTAAGCCTCATAGAAAGCAGCAATATCGGCAGTGAAGAGGCGAGGCATGCACCAAGGTTCAGGAAACACCATAGTGACATCAAAGTCATTGATCTTCAGGGCTGCACTCAGTTCGAGGCCGATATAACCTCCTCCAACAACCACTGCCTTGCCACCCTTCTTTGCCTGGATAGCTGCAACCAGCTTGTCAGCATCATCAATTTCCCTTAGATATAGAATGTTGTTAGAATCAGCTCCTTGTGTGCCAAAATCGGTGAGCTTTATGACCGAGGAGCCAGTAGCAATGAGCAAGATCTCATATGTAAAGTTTGCTCCAGCTGCACTAGTCAGAGTCTTGGTGGAAAGATCAGCTTTGACAATTTCTGTACTAAGGATCAGCTCAATGCCTTTCTCTGAGTACCACTCAGGCAATAGCTTCTCTCCACCACTTCCCACACATACATAAAATCCTGGGAGTCTTGCAGCATTCGTAGGAAAGAGGTAACCTTTGCTTAGGGCAGGACGCTCGTAAGGAGCCACAGCCTCCTTGGAGATGATTGCAAGCTCCCCAGGCTTAACTCCCTGCTTGGCGAACTCCCGCGCCGCGTACCCCGCCGCGACGCCGCCGCCGAGGATGACGTACTTGAAGTGCTTTTCGGACGCCATGCCTCCCGCCGAATCGAACTGTATCAGCCCTACTCGGATTCGATCGAACTACAGTGACCAGTCAGTCCGCTCAACTTCTGCCGGCCTGGAGATCCGATTTGGGGAGCGACTAGGGAGGGAGAAGACCTCGTGC 1679 monodehydroascorbate reductase gi|238010018|gb|ACR36044.1|unknown [Zea mays] ACR36044 0.0 99 0016656|0015036|0022900|0055114|0016491|0050660|0009055|0005737
18 1 2 6 MZ00030489 TTCGAGCTGTTCTGGATGGAAAGGATCGGACGTGTGGTTATCTTTCCAATCGCCTATCATGTTCTCTACT TC317122 CCCATGTAATCGACCTTTGCACTTTGTTTAATATTAATTGAAAAGGCTGAAAGACAAGACTTTTGGATTGTTGTTTTGTACTGTTGGGAGATGAACACTAGTTTGGAGATTAGCAATAATTACTAACAATTGCCCAGGAAAAAAAAACAAAGCTAATCCGCCAAGAACGTGTTTGTATTGCAAACACTTTCTAGCTGTGAGAAGCTACTTTAACAGATTGTATGTATACACGAGAACAAAAGTAGAGAACATGATAGGCGATTGGAAAGATAACCACACGTCCGATCCTTTCCATCCAGAACAGCTCGAAAGCATCCGATTAGGTAGAAGAGTTTCGAAATCCAACGAAGCAGCAGCGAGCAGGCGGGCTTTCAGCCGCTGAGCTCCAAGAAACGCCTGGCCATCGGGTGCTTGGCGTCGGACAGGTCGGACGGCGCGAGCACCTCCACGACCTCGCCGGCGACGACGAGGCACACCAGGTCGGCGATGCGCTGGATCTGCTTCACGCTGTGGGAGACGATCACCGTGGTGAGCCCCCTCGTCTTCTTCAGCCGCACGATGGCCTCCTCGATGTTCTGCGTCGAGATGGGGTCCAGCGCGCTGGTCGGCTCGTCCAGCAGGAGCACCTCGGGGTCGTTGGCGAGGGTCCGGGCCAGGGCGACGCGCTGTGCCTGCCCGACCGACAGCTCGGACGCCGGCTTGGAGCACAGAGCAGGGTCCAGGTCGGC 728 phosphate import ATP-binding protein pstB 1 gi|226494085|ref|NP_001152673.1|phosphate import ATP-binding protein pstB 1 [Zea mays] >gi|195658785|gb|ACG48860.1| phosphate import ATP-binding protein pstB 1 [Zea mays] NP_001152673 5.99E-43 100 0016887|0005524|0006817|0000166|0016020|0005315|0017111|0015114|0005215|0005215
19 1 2 7 MZ00003819 TGGCGGCCGGCGGGAAGTGATCTGATATTCTGATGTGATGGACTTGTGCAGATTGCAACGTTGATAGCTT CO447436 CTCGGTNCCGGNNAATTCCCGGCGTCGACCCACGCCGTCCGGGNAAATACAAGGGAAATAAGAGTACAGATATGCCAACTGGTAGGCTGAGCGGCAACATCACCCAGGACTGGGAGCCGGTGGTTCTGCGCCGTACGAAGCCGAAGGCGGCGGACCTCAAGTCGTCGAAGGCGGTGAACCAGGCGCTGCGGTCGGGCGCAGCCGTGGAGACGGTGCGCAAGTCAGCGGCGGGCATGAACAAGCACTCCACGACGGTGGCGCCCGCGCGTAAGCTGGACGAGACGACGGAACCCGCGGCGGTGGAGCGGGTGGCTGTGGAGGTGCGCGCGGCAATCCAGAAGGCGCGCGTGGCCAAGGGATGGAGCCAGGCGGAGCTGGCGAAGCGCATCAACGAGCGCGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCGGCGCCGGCCCANGCCGTGCTTGCCAAGATGGAGCGCGCTCTCGAGGTCAAGCTCCGTGGGAAGGGCGTCGGCGCGCCACTGGCGGCCGGCGGGAAGTGATCTGATATTCTGATGTGATGGACTTGTGCAGATTGCAACGTTGATAGCTTAACCTCTTTTTTGAATCGGCTGGTTCGGATGGGCAGTTTGTGTTTGTAGGATCGTAATTGGGGGAATACTATATGATGTGAAGGACTTGTTGCGATGTTTGATTGGTAAATGGTTGTGGATGTCGAGCATTATTTGTAGCACTGTATGCATGCGTATAGTCCGTCTATAAGCGTGGAAAGTCTGTCGTAGGATTAGATCAGGTGGTTCAAAGTTNTTCTCTGTTACGTGTTATCCCTCTTAAATTGCACGAGTTGNNTG 842 ethylene-responsive transcriptional coactivator gi|226499370|ref|NP_001151413.1|endothelial differentiation-related factor 1 [Zea mays] >gi|195646600|gb|ACG42768.1| endothelial differentiation-related factor 1 [Zea mays] NP_001151413 4.15E-61 96 0043565|0003677|0003700|0009873|0009737|0045941|0009414|0005730|0009408|0009408|0003713|0006350|0009723
20 1 2 8 MZ00015957 CCGAGAAATCACTTGGACTTGCGCAACCGCTTAAATTCTAAAGGCCAGAGGGAGGGGAAGGTCATCGATT TC313192 TTTTTTCCCAAAAAAATGCATGTAATCTTTGATGCTGTCATTGACCAACATGCAGTCATCAAACTGTACTCAGTACTCAACAACAAGACCTTAGAATAGAAGCATTCAAATTTCCTATAGCCCCTGACAGGATAATTCAACCGGCCGTTTTAAACTGTAGTTCATCGGTATGCAAAAATTGATGTCCAGTTGCTTTCTCTACAGATCAGTCTAAGCTTTTGTTTACAGGAAATATGAGTGCAACACAAACAATCAGAATTGGCAGCTGCATGTCTCTCTAAATGGTGTCAGGGACTACTAGAGCTGTGTTCTTTAACATTTTCCAACCTGTCGCCTGTTTTGCTTTTTGCGAAACAACGACCTGCCCCCGGCATGTCATAGCTCATCATCAATCTGGATGGTAGCACTTGTAGATCGGCAGTGTTTGCTAATATCTTCACAAAGGGCCTTGCTTACATATTCTGATTCTGTGGAGGTTGTTTTGATCCACTCAGAGAGCTCATCCTCCGTTTCCTCCAGTAGCCTTCCACAGAAGGTGGACAATTTTTTGGAGTGCGCTCTTGCTGCTGCCTTATTTTCAGTTTGAAAGCTATTCCAGTCTGTTACTTTAACCCATCCCTTTTCGCCTGATTCCAACTTCTTTAAGGTATAATCTTGCATCTTATCGCATAGGCCATCCAGAAGTTCCACAACCCGAAGCTCACTGACCCTATAATCGATGACCTTCCCCTCCCTCTGGCCTTTAGAATTTAAGCGGTTGCGCAAGTCCAAGTGATTTCTCGGCTTCTCACTCGAAATTCCAATCTCCAGCTCCGCAGCAACGGCCTTGCAGGCGGCGCACTTGTCTCCGATGGCGGATGCGGGGATGACGACCTCCGCAATGATGGCGGCGAGGAGAAGGAGGGCGCCGGATCTGTAGATTGCAGATCTCGGCTCCATCTCCGGCGGTCTCGTCTCCGGTCTCCCTCCCGATTTCCAGTCTCCGCTTCCGCGTGAGGGGTGGTCGTTTTACAGATGTAGCCTCGAGATCCTGTACATGTTCAAACACGTCCGTACTATTTCAGCTGCTACAGAAGTTTCCGGAACTGCGGTGTGTGAAACAAG 1104 protein gi|195621680|gb|ACG32670.1|MIR-interacting saposin-like protein precursor [Zea mays] ACG32670 1.58E-83 99 0012505|0000815

Total number of rows: 1536

Table truncated, full table size 1981 Kbytes.




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