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Platform GPL17952 Query DataSets for GPL17952
Status Public on Feb 26, 2014
Title NimbleGen Horse CGH 3x1.4M Whole-Genome Tiling Array [121114_EquCab2_SW_CGH_UX3]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Equus caballus
Manufacturer NimbleGen
Manufacture protocol See www.nimblegen.com
 
Description Format:3x1.4M
Source: NCBI
Build:Equus caballus EquCab2.0
Probe Length: 50-75mer
Median Probe Spacing: 1650 bp
 
Submission date Nov 19, 2013
Last update date Feb 26, 2014
Contact name Wei Wang
E-mail(s) wangwei13233@163.com
Phone 86-15124775364
Organization name College of Life Sciences Chinese Inner Mongolia Agricultural University
Lab Key Laboratory of biological manufacturing
Street address Inner Mongolia Hohhot City Saihan District Zhao Wuda road 306
City Hohhot
ZIP/Postal code 010018
Country China
 
Samples (6) GSM1267959, GSM1267960, GSM1267961, GSM1267962, GSM1267963, GSM1267964
Series (1)
GSE52504 Genome-wide detection by array CGH of copy number variations among diverse horse breeds

Data table header descriptions
ID
POSITION Probe start position
CHROMOSOME Chromosome number
SEQUENCE

Data table
ID POSITION CHROMOSOME SEQUENCE
CHR10FS000000523 523 chr10 TACTGACATTGGAGATTCTTTAATGGAATTACCCGATGGTCACCCTCCAGTAAA
CHR10FS000001856 1856 chr10 CAACATCATATTTGTAAAGATCCTTTTAGGGACCGGCCTGCTGGCGCAAT
CHR10FS000005164 5164 chr10 TGTGTTTCCTGAAGGCAGAATTTTGTCAGGTCTTTAATCCATCCTGGCACT
CHR10FS000007110 7110 chr10 TTGCCTGCACACTTTCCCTGGTGCCTCTGCCATGCTCACCACACTGTGCT
CHR10FS000008960 8960 chr10 CATGGATTCACGTTTCTCCAATTAGACTTTAATCCTCGTAAGCACAAAGACTATGTCTG
CHR10FS000010610 10610 chr10 AGACGCTTAGTGCGTTGTCACTAAGATTACTGTTATATCTTACGCCATCTGTCACATT
CHR10FS000011860 11860 chr10 CAGCACTTTTAAAACTCCTGGAGAATTCCAGTGTGCAGCTGTCACCTCCC
CHR10FS000013810 13810 chr10 GGGCTAAAGCTAAGCTGTAGCTCATGGACCTTTTGGTAGATTTAGGAAGA
CHR10FS000015510 15510 chr10 AGTTTGGCTTTGTAAGCATCATGCTGGTTGCAAGGGCTTGGAGGACGCAG
CHR10FS000017160 17160 chr10 CATGTGAAGGAACTGACATAAGGGTGGGAAGAAAACGGACATGCAGAAGG
CHR10FS000018744 18744 chr10 TTCATTCATTCCTTCGTTCAGAAAACACAAGTGCTACAACAAGGAGCAAGGCA
CHR10FS000020094 20094 chr10 TGACCATGAGCAATTATTGTATGCTGGAAGCTGTACCCAGCGATATATCTAATC
CHR10FS000021794 21794 chr10 TGTAGAGAATGCTTTGGAACAGTCCACTGGGATTAGTCAGGACTCTTGAG
CHR10FS000023394 23394 chr10 ATCCTGGAGTAATTGATAGTGTCCAGAATTGGTGGACAGTGTCATAAATTGGG
CHR10FS000025194 25194 chr10 GGCCTTGCCTCTGAAGATTGGGCTGATTAGTCACCTGCATTTTACGACAT
CHR10FS000026894 26894 chr10 CCACTGGTCTAAAGTCAAGGTCTGCGCCGTGGCTGCGTACAGCTGCTCCT
CHR10FS000028544 28544 chr10 TTCACATCACACTGGGATTCCTTCACTATCCTCATGAGGACTAGAAGGCA
CHR10FS000030044 30044 chr10 CTAATGCTGTACAAGGCTACCCATTTGAGGCACTGCGCTAAGGGCTTCAG
CHR10FS000031544 31544 chr10 CGGCTGCAGGGCAAAATAACTCGACACATTCATTTTTGGGATTTCATGTAGAT
CHR10FS000032994 32994 chr10 AGTCTTGCAAATCCATTGCTGATTCTCCAGAAACCCTGTCTCTCAAAGATTTTC

Total number of rows: 1402459

Table truncated, full table size 118584 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL17952_121114_EquCab2_SW_CGH.ndf.gz 80.0 Mb (ftp)(http) NDF
GPL17952_121114_EquCab2_SW_CGH.pos.gz 10.8 Mb (ftp)(http) POS

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