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Platform GPL18078 Query DataSets for GPL18078
Status Public on Dec 18, 2013
Title Affymetrix GeneChip Mouse Genome 430 2.0 Array [AffyProbeMiner cdf (Mouse430_2_transcript_refseq) version 1.0.0]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol This identical to GPL1261 but an alternative cdf environment was used to extract data.
 
Description An alternative probe set mapping published by the AffyProbeMiner project (remapped transcript consistent cdf-file, using validated complete coding sequences in GenBank, version 1.0.0)
Mouse430_2_transcript_refseq.cdf
 
Submission date Dec 17, 2013
Last update date Dec 18, 2013
Contact name Florian Wegwitz
Organization name University Medical Center Hamburg-Eppendorf
Department Department of Tumor Biology
Lab Group Prof. Dr. Wolfgang Deppert
Street address Martinistraße 52
City Hamburg
State/province Hamburg
ZIP/Postal code 20246
Country Germany
 
Samples (12) GSM1290799, GSM1290800, GSM1290801, GSM1290802, GSM1290803, GSM1290804 
Series (1)
GSE53395 Expression of mutant p53 in Mammary carcinomas in WAP-SV40 transgenic mice

Data table header descriptions
ID UID
Gene Symbol
Acessions
EntrezGID
Probes
GB_LIST GenBank Accession number(s)

Data table
ID Gene Symbol Acessions EntrezGID Probes GB_LIST
Mouse430_2HF1 Ntrk1 XM_283871.3+XM_908571.2+XM_986890.1;XM_899794.2+XM_920892.2+XM_986774.1;XM_899800.2+XM_920900.2+XM_986810.1;XM_899803.2+XM_920908.2+XM_986852.1 18211 1443990_at XM_283871.3, XM_908571.2, XM_986890.1, XM_899794.2, XM_920892.2, XM_986774.1, XM_899800.2, XM_920900.2, XM_986810.1, XM_899803.2, XM_920908.2, XM_986852.1
Mouse430_2HF10 Rbp3 NM_015745.2 19661 1425105_at NM_015745.2
Mouse430_2HF100 Opcml NM_177906.4 330908 1457446_at NM_177906.4
Mouse430_2HF1000 Drd3 NM_007877.1 13490 1422278_at NM_007877.1
Mouse430_2HF10000 Top1 NM_009408.2 21969 1423474_at NM_009408.2
Mouse430_2HF10001 Tex16 NM_031382.2 83556 1421700_at NM_031382.2
Mouse430_2HF10002 Mybpc3 NM_008653.2 17868 1418551_at NM_008653.2
Mouse430_2HF10003 Tnfrsf1b NM_011610.3 21938 1418099_at;1448951_at NM_011610.3
Mouse430_2HF10004 3110031B13Rik NM_026075.2 67288 1420507_a_at NM_026075.2
Mouse430_2HF10007 1190002J23Rik NM_001033039.2 68874 1435620_at NM_001033039.2
Mouse430_2HF10008 Foxj1 NM_008240.2 15223 1425291_at NM_008240.2
Mouse430_2HF10009 Tsga13 NM_054073.2 116732 1420587_at NM_054073.2
Mouse430_2HF1001 Zfp511 XM_887149.2+XM_916730.2+XM_991507.1 69752 1429610_a_at;1434858_x_at;1460572_a_at XM_887149.2, XM_916730.2, XM_991507.1
Mouse430_2HF10010 Kpna6 NM_008468.3 16650 1418590_at;1426796_at NM_008468.3
Mouse430_2HF10011 Rnf17 NM_001033043.1 30054 1425709_at;1438820_at;1459275_at NM_001033043.1
Mouse430_2HF10013 Gipc2 NM_016867.1 54120 1417178_at NM_016867.1
Mouse430_2HF10014 6430604K15Rik;9130019O22Rik;E430018J23Rik;Zfp764 NM_030226.2;NM_146203.3;NM_175560.3;NM_198011.1;XM_972615.1;XM_972658.1 101604;233893;269997;78921 1451571_s_at NM_030226.2, NM_146203.3, NM_175560.3, NM_198011.1, XM_972615.1, XM_972658.1
Mouse430_2HF10015 Blnk NM_008528.4 17060 1451780_at NM_008528.4
Mouse430_2HF10016 1110002B05Rik NM_134054.2 104725 1448388_a_at NM_134054.2
Mouse430_2HF10017 Tmc4 NM_181820.2 353499 1427178_at NM_181820.2

Total number of rows: 18328

Table truncated, full table size 1641 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL18078_Mouse430_2_transcript_refseq.ann.annd.txt.gz 480.9 Kb (ftp)(http) TXT
GPL18078_Mouse430_2_transcript_refseq.cdf.gz 7.8 Mb (ftp)(http) CDF
GPL18078_Mouse430_2_transcript_refseq.cdf.txt.gz 2.9 Mb (ftp)(http) TXT

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