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Platform GPL18128 Query DataSets for GPL18128
Status Public on Dec 31, 2014
Title Functional gene array GeoChip 4.2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Bacteria; Archaea; Eukaryota; Viruses
Manufacturer NimbleGen
Manufacture protocol http://ieg.ou.edu/protocol.htm
 
Description Custom microarray.
50-nt oligonucleotide probes.
 
Citation(s) 18043615
Submission date Dec 31, 2013
Last update date Mar 26, 2015
Contact name Yu Xia
E-mail(s) xia-y11@mails.tsinghua.edu.cn
Organization name Tsinghua Univeristy
Department Environmental school
Street address Tsinghua University, Haidian District
City Beijing
State/province Beijing
ZIP/Postal code 100084
Country China
 
Samples (33) GSM1299948, GSM1299949, GSM1299950, GSM1299951, GSM1299952, GSM1299953 
Series (2)
GSE53744 Overall functional diversity of microbial communities in three full-scale activated sludge bioreactors
GSE67307 Comparison of overall functional gene structures of a membrane bioreactor (MBR) and an oxidation ditch (OD) running parallelly at full-scale

Data table header descriptions
ID
GenBank ID GenBank GI of protein
Gene_name Name/symbol of gene detected
Gene_category Categories according to gene function
Sub-category1 Coarse division of gene categories
Sub-category2 Fine division of gene categories
Organism Organism the gene derives from
Lineage Phylogenetic information of organism
SPOT_ID

Data table
ID GenBank ID Gene_name Gene_category Sub-category1 Sub-category2 Organism Lineage SPOT_ID
1001193 1001193 pstB Stress Phosphate limitation Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; pstB
1001208 1001208 nirA Nitrogen Assimilatory N reduction Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; nirA
100123316 100123316 mdlA Organic Remediation Aromatics Aromatic alpha hydroxy acid Burkholderia pseudomallei S13 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;species:Burkholderia pseudomallei; mdlA
1001563 1001563 rubisco Carbon cycling Carbon fixation Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; rubisco
1001781 1001781 ppk Phosphorus Phosphorus utilization Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; ppk
1001821 1001821 nreB Metal Resistance Nickel Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; nreB
1001835 1001835 nitA Organic Remediation Aromatics Other aromatics Synechocystis sp. PCC 6803 superkingdom:Bacteria;phylum:Cyanobacteria;order:Chroococcales;genus:Synechocystis; nitA
10038703 10038703 gyrB other category gyrB Buchnera aphidicola str. APS (Acyrthosiphon pisum) superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buchnera;species:Buchnera aphidicola; gyrB
10039289 10039289 pcbC soil_benifit Streptomyces viridochromogenes superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces; pcbC
10039307 10039307 gyrB other category gyrB Capnocytophaga gingivalis superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteria;order:Flavobacteriales;family:Flavobacteriaceae;genus:Capnocytophaga; gyrB
10039313 10039313 gyrB other category gyrB Flexibacter japonensis superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteria;order:Sphingobacteriales;genus:Chitinophaga; gyrB
10039315 10039315 gyrB other category gyrB Flexibacter elegans superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Flexibacter; gyrB
10039321 10039321 gyrB other category gyrB Flexibacter flexilis superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Flexibacter; gyrB
1004217 1004217 RgaE_fungi Fungi function carbon degradation Aspergillus aculeatus superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Aspergillus; RgaE_fungi
1005418 1005418 dmaW_ergot Fungi function toxin Claviceps fusiformis superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Hypocreales;family:Clavicipitaceae;genus:Claviceps; dmaW_ergot
1009366 1009366 narG Nitrogen Denitrification Bacillus subtilis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; narG
10129889 10129889 sigma_32 Stress Sigma factors Sinorhizobium meliloti superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium; sigma_32
10172799 10172799 alkJ Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; alkJ
10173008 10173008 nep soil_benifit Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; nep
10173299 10173299 SMR_antibiotics Antibiotic resistance transporter Bacillus halodurans C-125 superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;species:Bacillus halodurans; SMR_antibiotics

Total number of rows: 51153

Table truncated, full table size 11644 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL18128_Design_file_of_GeoChip.txt.gz 4.7 Kb (ftp)(http) TXT

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