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Status
Public on Jan 10, 2014
Title
Agilent-031068 EmbryoGene Porcine Array V.1 (EMPV1; Probe Name version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Sus scrofa Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G2514F
Support
glass
Description
EmbryoGENE Porcine Embryo microarray
Web link
http://www.embryogene.ca Contributor(s)
Tsoi S , Zhou C Submission date
Jan 08, 2014
Last update date
Jan 10, 2014
Contact name
Stephen Tsoi
E-mail(s)
scmtsoi@gmail.com Phone
780248-1567
Organization name
University of Alberta
Department
AFNS
Lab
Porcine Functional Genomics
Street address
4-32G Agriculture/Forestry Cen
City
Edmonton
State/province
Alberta
ZIP/Postal code
T6G 2P5
Country
Canada
Samples (51)
GSM1304013 , GSM1304014 , GSM1304015 , GSM1304016 , GSM1304017 , GSM1304018
GSM1304019 ,
GSM1304020 ,
GSM1304021 ,
GSM1304022 ,
GSM1304023 ,
GSM1304024 ,
GSM1304025 ,
GSM1304026 ,
GSM1304027 ,
GSM1304028 ,
GSM1304029 ,
GSM1304030 ,
GSM1304031 ,
GSM1304032 ,
GSM1304033 ,
GSM1304034 ,
GSM1304035 ,
GSM1304036 ,
GSM1304037 ,
GSM1304038 ,
GSM1304039 ,
GSM1304040 ,
GSM1304041 ,
GSM1304042 ,
GSM1304043 ,
GSM1304044 ,
GSM1304045 ,
GSM1304046 ,
GSM1304047 ,
GSM1304048 ,
GSM1304049 ,
GSM1304050 ,
GSM1304051 ,
GSM1304052 ,
GSM1592244 ,
GSM1592245 ,
GSM1592246 ,
GSM1592247 ,
GSM1592248 ,
GSM1592249 ,
GSM1592250 ,
GSM1592251 ,
GSM1592252 ,
GSM1592253 ,
GSM1592254 Series (2)
GSE53956 Gene expression profiles of Day 30 embryos from diet-restricted sows
GSE65310 Mitochondrial supplementation at fertilization enhances early developmental outcome
Data table header descriptions ID Agilent Probe name
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence
GB_ACC GenBank Accession number
ORF ORF Name
SPOT_ID Spot identifier
Data table ID CONTROL_TYPE REFSEQ GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE GB_ACC ORF SPOT_ID EMPV1_00001
FALSE
NULL
Gene
unmapped
TCCTTCAGATCGTCAGGGATTTCTGTAAGCTTCCCTCTGTTGTGGAAGGGAACCACTCAG
EMPV1_00002
FALSE
NULL
Control
unmapped
ACTGGGAATGGCAGCTCGGTGCCTGAAGGACGGAGCTCCCGGGACAGAACAGCCCCCTCT
EMPV1_00003
FALSE
WDR36
Gene
ENSSSCT00000015514
unmapped
WD repeat domain 36 [Source:HGNC Symbol;Acc:30696]
TGAAGCTGCTCTTAGCCTTCTGAAAGAATTAGGCCCATCAGGAATTGAAACAGAGCTGCG
WDR36 EMPV1_00004
FALSE
OCIAD2
Variant
ENSSSCT00000009663
unmapped
OCIA domain containing 2 [Source:HGNC Symbol;Acc:28685]
TGCTTATCACCCAAGGGCTGGTCCACCAAGTTGCTGGTATCTTGGGATTTGGCCTTGGAA
OCIAD2 EMPV1_00005
FALSE
NULL
Gene
unmapped
TACCAGCCTATACCACAGCCATAGTGACACCAGATCCCAGCCACATCCGCTACCTATGCT
EMPV1_00006
FALSE
XM_003356332
LOC100621714
Gene
unmapped
PREDICTED: Sus scrofa uncharacterized protein C18orf19 homolog (LOC100621714), mRNA
CAAATCTCAGTCACTGTGCTTGCATCCCATCAACATCTAGGCTAGCACAGAAGTCAGCAG
XM_003356332 LOC100621714 EMPV1_00007
FALSE
PAM
Variant
ENSSSCT00000015497
unmapped
peptidylglycine alpha-amidating monooxygenase [Source:HGNC Symbol;Acc:8596]
AACGAGAAGAAGAGGAAGTGTTAGAACAGGATTTCCATGTAGAAGAGGCACTGGATTGGC
PAM EMPV1_00008
FALSE
NULL
Control
unmapped
CAGCACTGCCAACAGGTCTACACACAATGAGCTGGAAAAGAATCGACGAGCTCACCTTCG
EMPV1_00009
FALSE
NULL
Gene
ENSSSCT00000021476
unmapped
TTATGTGTGTAGGTGCATGTGCATGTGTGTGCGTGCACACACATGCACACACACACACAC
EMPV1_00010
FALSE
SLC45A4
Gene
ENSSSCT00000006510
unmapped
solute carrier family 45, member 4 [Source:HGNC Symbol;Acc:29196]
TGCTGCAGAAGTACCTGGACAACTACGACCTGAGCATCAGGGTCATCTACGTGCTGGGGA
SLC45A4 EMPV1_00011
FALSE
SLC9A3R2
Gene
ENSSSCT00000008808
unmapped
Na(+)/H(+) exchange regulatory cofactor NHE-RF2 [Source:RefSeq peptide;Acc:NP_001131111]
TCAACAAGCGGGCGCCACAGATGGACTGGAACCGGAAGCGTGAGATCTTCAGCAACTTCT
SLC9A3R2 EMPV1_00012
FALSE
NULL
Control
unmapped
AAGGGAGAACCGGCCAGGCCTGTGCTTGCTGCAGGGCCAGGCGAAGACGGCCCTGCTGGT
EMPV1_00013
FALSE
XM_001926963
LOC100153412
Gene
ENSSSCT00000001725
unmapped
PREDICTED: Sus scrofa transcriptional enhancer factor TEF-5-like (LOC100153412), mRNA
CTTCGTGTACCGCATCCACCGCTCGCCCATGTGCGAGTACATGATCAACTTCATCCACAA
XM_001926963 LOC100153412 EMPV1_00014
FALSE
XM_003131865
LOC100519563
Gene
ENSSSCT00000019444
unmapped
PREDICTED: Sus scrofa p2X purinoceptor 5-like (LOC100519563), mRNA
TGAGCAGATGTGATGAAGATACACAACGGCCTGCAGCTCTGACTCGGAAAGGGTCGTCGT
XM_003131865 LOC100519563 EMPV1_00015
FALSE
Mar-06
Gene
ENSSSCT00000018612
unmapped
E3 ubiquitin-protein ligase MARCH6 [Source:RefSeq peptide;Acc:NP_001124007]
GAACACTTACTTTGGTAGGGGCGTCAGTTTTCTTTAACCCCTTAGACACTCAGGCCAACT
EMPV1_00016
FALSE
NULL
Gene
unmapped
AAAACAGTCTTGGCTTCTGACGTGCTGTGTGTAGCCGCTGCTTGTGTGAATCATCAGCCC
EMPV1_00017
FALSE
HNRNPA1L2
Gene
ENSSSCT00000005971
unmapped
heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067]
GCCACACAAGGTGGATGGAAGAGTTGTGGAACCAAGGAGGGCTGTCTCAAGAGAAGATTC
HNRNPA1L2 EMPV1_00018
FALSE
NULL
Gene
ENSSSCT00000009525
unmapped
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1S8L7]
GTGAGAGAACGGAAAATTACAAGCTGCGGAAAAAGCAAGACCTCGGCGATCCTGTGTCAG
EMPV1_00019
FALSE
NULL
Gene
unmapped
AGGATATCATCATTACGTCACCATCTGCACCCCGGCACATCCGTCAGTGCCCAAACATTG
EMPV1_00020
FALSE
XM_003125607
LOC100524619
Gene
unmapped
PREDICTED: Sus scrofa hypothetical protein LOC100524619 (LOC100524619), mRNA
TTACTTTTCCGCCTGCAACTGGAGGAGAAAGACTCCTGAGTCACCGTCGGCCTTGCGCGA
XM_003125607 LOC100524619
43856 7542 Kbytes .Supplementary data files not provided
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