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Platform GPL18165 Query DataSets for GPL18165
Status Public on Jan 15, 2014
Title Institute for Environmental Genomics (IEG) GeoChip 4.2 [by Beijing University of Chemical Technology]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Bacteria; Archaea; Eukaryota; Viruses
Manufacturer Institute for Environmental Genomics (Norman, OK)
Manufacture protocol http://ieg.ou.edu/protocol.htm
Microbes in activated sludge
 
 
Submission date Jan 14, 2014
Last update date Jan 15, 2014
Contact name Xiaohui Wang
E-mail(s) wangxiaohui2008@gmail.com
Organization name Beijing University of Chemical Technology
Street address 15 beisanhuan east road, chaoyang district, beijing, 100029
City Beijing
ZIP/Postal code 100029
Country China
 
Samples (12) GSM1306517, GSM1306518, GSM1306519, GSM1306520, GSM1306521, GSM1306522 
Series (1)
GSE54055 Microbial community functional structures in wastewater treatment plants as characterized by GeoChip

Data table header descriptions
ID
PT_GI GenBank gi number of protein
Gene category The categories according to gene functions
Sub-category1 coarse division of gene categories
Sub-category2 fine division of gene categories
Organism The organism the gene derives from
Lineage The phylogenetic information of organism
SPOT_ID The name of gene detected

Data table
ID PT_GI Gene category Sub-category1 Sub-category2 Organism Lineage SPOT_ID
67540332 67540332 Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Emericella;species:Emericella nidulans; mdlC
291554707 291554707 soil_benifit Erwinia amylovora CFBP1430 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Erwinia;species:Erwinia amylovora; sped_bac
145572455 145572455 Metal Resistance Silver Pseudomonas stutzeri A1501 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas stutzeri; silC
142688 142688 Carbon cycling Carbon degradation Chitin superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; endochitinase
84501125 84501125 Stress Phosphate limitation Oceanicola batsensis HTCC2597 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Oceanicola;species:Oceanicola batsensis; pstB
296394412 296394412 Sulphur sulfite reductase Segniliparus rotundus DSM 44985 CysJ
209497899 209497899 Organic Remediation Aromatics Chlorinated aromatics Burkholderia sp. H160 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia; tfdA
160896251 160896251 Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Delftia;species:Delftia acidovorans; pimF
3021322 3021322 Stress Oxygen stress Bradyrhizobium japonicum superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium; fnr
88814759 88814759 Antibiotic resistance transporter marine actinobacterium PHSC20C1 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria; SMR_antibiotics
154508996 154508996 Stress Radiation stress Actinomyces odontolyticus ATCC 17982 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Actinomycetaceae;genus:Actinomyces;species:Actinomyces odontolyticus; obgE
27352759 27352759 Organic Remediation Aromatics Nitoaromatics Bradyrhizobium japonicum USDA 110 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Bradyrhizobiaceae;genus:Bradyrhizobium;species:Bradyrhizobium japonicum; nhh
119491468 119491468 soil_benifit Neosartorya fischeri NRRL 181 superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Eurotiomycetes;order:Eurotiales;family:Trichocomaceae;genus:Neosartorya;species:Neosartorya fischeri; tre_fun
77361354 77361354 Stress Sigma factors Pseudoalteromonas haloplanktis TAC125 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Pseudoalteromonadaceae;genus:Pseudoalteromonas;species:Pseudoalteromonas haloplanktis; sigma_24
189425459 189425459 Organic Remediation Aromatics Aromatic carboxylic acid Geobacter lovleyi SZ superkingdom:Bacteria;phylum:Proteobacteria;class:Deltaproteobacteria;order:Desulfuromonadales;family:Geobacteraceae;genus:Geobacter;species:Geobacter lovleyi; bco
239801383 239801383 Stress Sigma factors Variovorax paradoxus S110 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Comamonadaceae;genus:Variovorax;species:Variovorax paradoxus; sigma_38
77362680 77362680 Organic Remediation Aromatics Other aromatics Rhodococcus sp. AN-22 superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Nocardiaceae;genus:Rhodococcus; Catechol
120599747 120599747 Metal Resistance Arsenic Shewanella sp. W3-18-1 superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Alteromonadales;family:Shewanellaceae;genus:Shewanella; ArsC
171060286 171060286 Phosphorus Phosphorus utilization Leptothrix cholodnii SP-6 superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;genus:Leptothrix;species:Leptothrix cholodnii; ppx
158312217 158312217 Stress Phosphate limitation Frankia sp. EAN1pec superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Frankiaceae;genus:Frankia; pstC

Total number of rows: 29124

Table truncated, full table size 6483 Kbytes.




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