NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL18174 Query DataSets for GPL18174
Status Public on May 14, 2015
Title NimbleGen custom 3*1.4M chicken CGH array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Gallus gallus
Manufacturer NimbleGen
Manufacture protocol NimbleGen
 
Description galGal4
A NimbleGen custom-designed 3*1.4M array based on galGal4 2011 build used in our experiment, which contained a total of 1425178 50-75mer probes with a mean and median interval of 734bp and 700bp.
120717_GalGal4_JH_CGH.ndf
120717_GalGal4_JH_CGH.pos
 
Submission date Jan 15, 2014
Last update date May 14, 2015
Contact name Guoqiang Yi
E-mail(s) yiguoqiang20@hotmail.com
Phone +8662731351
Organization name Agricultural Genome Institute at Shenzhen
Street address No 7,Pengfei Road,Dapeng District,Shenzhen
City Shenzhen
State/province Guangdong
ZIP/Postal code 518120
Country China
 
Samples (8) GSM1308281, GSM1308282, GSM1308283, GSM1308284, GSM1308285, GSM1308286 
Series (2)
GSE54117 Validation experiment of copy number variations identified by next-generation sequencing in chickens (part 1)
GSE54119 Validation experiment of copy number variations identified by next-generation sequencing in chickens

Data table header descriptions
ID
SEQUENCE Sequence of oligo
SEQ_ID Genomic region targeted (galGal4)
POSITION Position on chromosome (galGal4)

Data table
ID SEQUENCE SEQ_ID POSITION
NW_003764381_1FS000003506 TGCGCTGCCACGGGCCGGCGTTCCGCTTTCTGAACCCCACCAACCGAGAA NW_003764381_1:1-13110 3506
NW_003764381_1FS000005107 TGCTGTGCGCATCCTCTGCAGCTGTGCCTGTTCGTGGGCAGCACAGAACA NW_003764381_1:1-13110 5107
NW_003764381_1FS000005907 AGAAATGCAGTATCGGTGTGAGATGCTGTTCTTACTAACTGAAAGTTCATCTGCT NW_003764381_1:1-13110 5907
NW_003764381_1FS000006957 ATAGGGCGAGGGGCCTGCAGATGTGCCTATTTCTGCTCGCTCTGCGTGAA NW_003764381_1:1-13110 6957
NW_003764381_1FS000007832 GGAATTTTGCAGGACACCTGTGAGACCTGTCACATGGAAGTGATGGACCC NW_003764381_1:1-13110 7832
NW_003764387_1FS000000801 GCAAAGCTGAAGGCTTTCCTCTTGGTACCTGCGGGATTTTGGGCCATCTG NW_003764387_1:1-7670 801
NW_003764388_1FS000009412 ACTTTTTCACCTGGCCTCATGTGTGTCCGTAAAAGACCTGGCAGAGCAGT NW_003764388_1:1-20138 9412
NW_003764431_1FS000008556 CAGAGGGCTCAGCCATGGGCTCCAGGCACCACAGCCATCTCTGCAGAGAG NW_003764431_1:1-9214 8556
NW_003764433_1FS000003851 TTGATTTGAAGCTGTACTTGAAAATGGCAAGAGTAGATAGGAAGTTCAACCACACTGAAC NW_003764433_1:1-12580 3851
NW_003764433_1FS000006841 AACAGCCAACTTCCTATCACCTCTGGGATGCTGGTTGAAAGTCCTAAATG NW_003764433_1:1-12580 6841
NW_003764433_1FS000010891 AAACTGGTGACATAAATGCAAGATCAAAGATCCAAGTTGTAAGGATCATTTTCTTAGCT NW_003764433_1:1-12580 10891
NW_003764435_1FS000007501 CTGTTAAGTGACGTAAAGCACCACACGGTGAATGCTCCCTCCAAGACGGT NW_003764435_1:1-23739 7501
NW_003764435_1FS000008151 GTGGAGCCGGCGGCGCGGCGGCGCTCTAGAGGTTTCTGGGCTCTCTCTAT NW_003764435_1:1-23739 8151
NW_003764435_1FS000008801 GGGAGGAGCATGGGAGTCATTCAGAAGTTTTCTGTTCCTCTTATCACGTT NW_003764435_1:1-23739 8801
NW_003764435_1FS000009501 CGGGACAGTGCTGAGAAGAGATTTAATCCATGTTCCTGTTGAGTTTTCCA NW_003764435_1:1-23739 9501
NW_003764451_1FS000015286 TTCTTTACAGAGCTGGTACTGTAGAATGCTGAATTCCAGCCACCTCTTCTT NW_003764451_1:1-20271 15286
NW_003764451_1FS000015936 AGTGCCCTCGATGATGGCACAAATGCCCAGAGACTTATGAGCTGATATGG NW_003764451_1:1-20271 15936
NW_003764451_1FS000016686 CCAAACATAGTGCATTTTCTGGATGCATACACTATCATCAGGCACTCTGACAAAAAGT NW_003764451_1:1-20271 16686
NW_003764451_1FS000017386 TTTCTGAAGAATCTTCTAAAATGGCTGTATTTTAAGTAAGCAATAAACTTTAGCAA NW_003764451_1:1-20271 17386
NW_003764451_1FS000018036 CTAAAGCTTGATAGTGTCAGTGTTTTTGACAGTCAGTATACATTCATGTGCTGTAGGG NW_003764451_1:1-20271 18036

Total number of rows: 1387102

Table truncated, full table size 133191 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL18174_120717_GalGal4_JH_CGH.ndf.gz 80.1 Mb (ftp)(http) NDF
GPL18174_120717_GalGal4_JH_CGH.pos.gz 16.2 Mb (ftp)(http) POS

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap