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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 05, 2014 |
| Title |
Lawrence Livermore Microbial Detection Array version 2f |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
synthetic construct |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
see manufacturer's web site www.nimblegen.com
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| Description |
Described in 'Gardner et al. A Microbial Detection Array (MDA) for Viral and Bacterial Detection. BMC Genomics 2010 Nov 25;11:668'
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| Submission date |
Mar 04, 2014 |
| Last update date |
Mar 05, 2014 |
| Contact name |
Kevin McLoughlin |
| E-mail(s) |
mcloughlin2@llnl.gov
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| Phone |
(925)423-5486
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| Organization name |
Lawrence Livermore National Laboratory
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| Department |
Global Security
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| Lab |
Pathogen Bioinformatics
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| Street address |
PO Box 808
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| City |
Livermore |
| State/province |
CA |
| ZIP/Postal code |
94551 |
| Country |
USA |
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| Samples (64)
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GSM1339477, GSM1339478, GSM1339479, GSM1339480, GSM1339481, GSM1339482
GSM1339483, GSM1339484, GSM1339485, GSM1339486, GSM1339487, GSM1339488, GSM1339489, GSM1339490, GSM1339491, GSM1339492, GSM1339493, GSM1339494, GSM1339495, GSM1339496, GSM1339497, GSM1339498, GSM1339499, GSM1339500, GSM1339501, GSM1339502, GSM1339503, GSM1339504, GSM1339505, GSM1339506, GSM1339507, GSM1339508, GSM1339509, GSM1339510, GSM1339511, GSM1339512, GSM1339513, GSM1339514, GSM1339515, GSM1339516, GSM1339517, GSM1339518, GSM1339519, GSM1339520, GSM1339521, GSM1339522, GSM1339523, GSM1339524, GSM1339525, GSM1339526, GSM1339527, GSM1339528, GSM1339529, GSM1339530, GSM1339531, GSM1339532, GSM1339533, GSM1339534, GSM1339535, GSM1339536, GSM1339537, GSM1339538, GSM1339539, GSM1339540
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| Series (1) |
| GSE55576 |
The Microbial Detection Array for Detection of Emerging Viruses in Clinical Samples - A Useful Panmicrobial Diagnostic Tool--Array Version 2f |
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| Data table header descriptions |
| ID |
Probe Identifier |
| PROBE_TYPE |
Type of probe: RANDOM for random negative control probes, TARGET for bacterial/viral targets |
| SEQUENCE |
Probe sequence |
| Data table |
| ID |
PROBE_TYPE |
SEQUENCE |
| MDAv2_388K_000001 |
TARGET |
GCTGGGCCTACGCCCGGCTACACCCGCCCCTGCACCACGCGCATCTACCAGGTCCTGCCG |
| MDAv2_388K_000002 |
TARGET |
TGGACAGGCTGGACGGATGACATTTTATTGGACAATAGTCAAACCAGGAGAGTCAATAAC |
| MDAv2_388K_000004 |
TARGET |
AAAAATTCAGACTTCCAAATTAAGTGGTCTCCCCCTGAGAGGACTGCTCTAACGAGCGTATTCCAGTCAG |
| MDAv2_388K_000006 |
TARGET |
GGGAGAATTCAGGACCTCGAGAAATACGTTGAAGACACTAAAATAGATCTCTGGTCTTAC |
| MDAv2_388K_000009 |
TARGET |
TTTGAAATTCGATAATTTTCCGTAGCTTGCGTCAAGCTGCTCACGTTAGGGGTGTGAGTG |
| MDAv2_388K_000013 |
TARGET |
CCAATCCAAGGGTTGGGGCTCATTGTCCAAAGCACAGAAAGCCACTGCTCGCTCGTACGG |
| MDAv2_388K_000015 |
TARGET |
CGACGCTCAACAGATTTTGAGTTTGACCCACATTCGAACTTTTATCATTTCACCCGTCCT |
| MDAv2_388K_000017 |
TARGET |
TATGACGCTGGCTGCGGCGAATTTGAATATCGGAAACATATCTCCAGACTACATACAAAA |
| MDAv2_388K_000019 |
TARGET |
CCCAACTCTGGTTAGTGGCAGCTTGAAATTTCCCCAATGCTCGCTCATAACGTACGTTCG |
| MDAv2_388K_000020 |
TARGET |
TACCAGTCTGCGAAGTGCTCTCCGACCGGCCCCACGTTCACCACGCCCTCGGCTTTCGAC |
| MDAv2_388K_000021 |
TARGET |
TAAGGGTGCATGAGGGATATGAAGAATTCACAATGGTTGGGAGAAGAGCAACAGCTATTC |
| MDAv2_388K_000023 |
TARGET |
CGCGGCGGTCTTTCCGTCTCTCGAAAAGCGCAGATGCAGCATGCTGGAACCGGTGAAGAA |
| MDAv2_388K_000024 |
TARGET |
GGCCCAGCCCGGGTCGGCGGGGCCCCCCAGTCCGCGGCTCTGCCGCGGACTGGGGAGGCA |
| MDAv2_388K_000025 |
TARGET |
CTACTCAACTGGTGCACTTGCCAGTTGCATGGGCCTCATATACAACAGAATGGGGACAGT |
| MDAv2_388K_000026 |
TARGET |
GCTTTAAAGAAATGGGGATAACTCCATATCGTGTGATGGAGTGGCTTGATGAGTACATGCC |
| MDAv2_388K_000028 |
TARGET |
CTTCTCATTGTTCAGGCACTTAGGGACAACCTGGAACCTGGAACCTTCGATCTTGGGGGG |
| MDAv2_388K_000030 |
TARGET |
CTTGAGAGGTGCGTGATTTCTTATGGGATCATGTCTTTTAAAATCTTTGCCGTTTCGGGG |
| MDAv2_388K_000035 |
TARGET |
AAACCGCTGGATGTGGCTCGCCGTCAACCTCTGCACCGCCTTCCTCGCCAGCCGCGTCAT |
| MDAv2_388K_000036 |
TARGET |
TCATGTCCCACCTCGGTTCTTCGGCAATATGGCAACGCTGGCGGGCGTCAAAACCCACCT |
| MDAv2_388K_000038 |
TARGET |
GGCCAACAGACTTGGGACAATGTGGGCTCCTAGGAACCCTAATAGGACCTCCCCAATGTG |
Total number of rows: 125690
Table truncated, full table size 10654 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL18370_MDAv2f.ndf.gz |
9.2 Mb |
(ftp)(http) |
NDF |
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