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Platform GPL18382 Query DataSets for GPL18382
Status Public on Oct 18, 2016
Title Agilent Custom P. vivax 8x15k Array designed by Ashis Das, Raja CM & Genotypic Technology Pvt. Ltd. (AMADID:022126)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Plasmodium vivax
Manufacturer Agilent Technologies
Manufacture protocol www.chem.agilent.com
 
 
Contributor(s) Das A, Mugasimangalam RC
Submission date Mar 06, 2014
Last update date Oct 18, 2016
Contact name Ashis Kumar Das
E-mail(s) ashisd28@gmail.com
Phone +91 9785766048
Fax +91 1596 244183
URL http://universe.bits-pilani.ac.in/pilani/adas/profile
Organization name Birla Institute of Technology & Science,Pilani (Pilani Campus)
Department Biological Sciences
Lab Malaria
Street address Vidya Vihar
City Pilani
State/province Rajasthan
ZIP/Postal code 333 031
Country India
 
Samples (14) GSM1341007, GSM1341008, GSM1341009, GSM1341010, GSM1341011, GSM1341012 
Series (1)
GSE55644 A custom genome-wide Plasmodium vivax 8x15K microarray for expression profiling of Indian clinical isolates showing complicated malaria

Data table header descriptions
ID oligonucleotide probe ID
ORF ORF Name
GB_ACC GenBank Accession number
GENE DESCRIPTION Gene Description
SEQUENCE oligonucleotide Probe sequence
SPOT_ID

Data table
ID ORF GB_ACC GENE DESCRIPTION SEQUENCE SPOT_ID
GT_15_NV_000002 PVX_116555 hypothetical protein, conserved | location=CM000453:1081898-1087498(+) | length=5601 AACTTTTACAGGACGTTCATTCTGCTGCTGCAGGTGTCCGCCCTTTCGCTGCTTTTCCTC
GT_15_NV_000031 PVX_112705 tryptophan-rich antigen (Pv-fam-a) | location=AAKM01000025:79107-79991(-) | length=885 CACATGGATAAAGGAGAAGCAGTGGAATGTGTGGCTTCATAAGGACAAAGAAGTAGGTAG
GT_15_NV_000078 PVX_086175 sybindin domain containing protein | location=CM000454:1895249-1896110(-) | length=570 AGAAAAAACGAGTTCCCCAAACAAAGTCGAGAAGGAGAAGCTCCTCTTGGGATCCATCTA
GT_15_NV_000090 AF314566.1 gi|14039414| Plasmodium vivax vir A2-28 mRNA, partial cds AACCTATGGTATAGGTTAAAAGGGAATATTTCTTTTTCTTGTAAAAGGAAAAGATACGAA
GT_15_NV_000092 PVX_002650 40S ribosomal protein S26, putative | location=CM000445:160594-161770(-) | length=830 CACTGCGCAAGTCTGTCTCGGAACGACGACCACTTTGTTTTCAATGCAAATTGTCGAAAA
GT_15_NV_000097 PVX_083470 glycerol kinase, putative | location=CM000453:97746-99916(-) | length=2171 AACTCTAAAATGGATGCAAAAAGTAGAAAGAGGAGAATTTCCGAGTGGGGCAAGGCCGTC
GT_15_NV_000110 DS482346.1 gi|157096427| Plasmodium vivax scf_5473 genomic scaffold, whole genome shotgun sequence ATATTGAAGGATTGAGTTGAATAGAAACATCATTCTTTAAAGAGTTATATTCACGATTGT
GT_15_NV_000132 PVX_086865 hypothetical protein | location=CM000448:1438634-1440903(-) | length=1731 GCGCGTTTGTTCTGAGTTATGTCCAAAATATTTTAAGTGCGATATAGGTTATTTTCCAAG
GT_15_NV_000149 PVX_115470 Pv-fam-d protein | location=CM000452:20956-23863(+) | length=2908 CAAGTTAGCTATCAGCCCGAACAGCCACAAAAGAAATGATTTGAGTACATAGATTAATTT
GT_15_NV_000189 PVX_083050 hypothetical protein, conserved | location=CM000453:475884-477158(+) | length=1275 CAGAAAATAATTACAACGATATGATGATCTGTGGCAATTTTATTAACTCCTCCTCTCCAC
GT_15_NV_000191 PVX_080130 hypothetical protein, conserved | location=CM000451:389800-417168(-) | length=26748 ATAATCGGGTGTATTCTCAGGTGCGTGTTTGCTCCCATTTTTGGCCTGCTGAACCTTTTT
GT_15_NV_000207 PVX_110810 Duffy receptor precursor | location=CM000447:976329-980090(+) | length=3213 CAGATCAAACTACAGATGCAGAAGGACATGACAGGGATAGCATCAAAAATGATAAAGCAG
GT_15_NV_000218 PVX_091375 serine/threonine-protein kinase PRP4K, putative | location=CM000450:464895-468816(+) | length=2240 ACCACATGATCAAGCTGATGATGGAGTACAAGGGGAAGTTCTCCCACAAGATGATCAAAG
GT_15_NV_000238 PVX_114840 hypothetical protein, conserved | location=CM000452:584491-585400(-) | length=910 AAGCGGCACTTTTGCCAACAATTTATTGCGTTTTTTCCGATTCGCCCCTTCCACCAATTG
GT_15_NV_000248 PVX_095085 hypothetical protein | location=CM000449:784721-785902(-) | length=546 TTAAACCAGTACAGAAGCATCGAACGGGAGATCCTCGACGTGTTAGCCGATTTGAAAGTT
GT_15_NV_000254 PVX_088085 cell division cycle ATPase, putative | location=CM000442:417025-420294(-) | length=3270 TCATCTTCTTCGACGAAATAGATTCGCTAGCAAAGGAACGAAACAGTAACAATAACAATG
GT_15_NV_000258 PVX_099980 major blood-stage surface antigen Pv200 | location=CM000448:1157742-1163137(+) | length=5396 ATGAAAAAGGAGCTACTCGATCAGTACAAACTTAACGCTGATGAGCAAAACAAAATTAAG
GT_15_NV_000263 PVX_095490 hypothetical protein, conserved | location=CM000449:1152795-1154678(-) | length=1884 TTCTTTTTTGTTTCCCTCTATCGAATTGTGCGCAAAATTTACGCTCATAAAGTTCGCTGA
GT_15_NV_000285 PVX_084280 hypothetical protein, conserved | location=CM000454:140745-144171(+) | length=3002 TTTTATAACCTAAAAGAGGGCCTCAGGCCGGTCCCCGTGGAGAAGCTCACCATGACGGAC
GT_15_NV_000303 DQ161146.1 gi|81297467| Plasmodium vivax isolate MalDB54VvC14 vir gene, partial sequence GTTGGTAATATTCTTCTTGGAGTAGTTGCAACTACAATGACCTCTGGCGCCTTATATAGG

Total number of rows: 14342

Table truncated, full table size 2455 Kbytes.




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