GEO help: Mouse over screen elements for information.
Status
Public on Sep 01, 2014
Title
Rice 135k tiling V2 array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Oryza sativa Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf file is linked below as supplementary files.
Submission date
Mar 18, 2014
Last update date
Sep 01, 2014
Contact name
Yeon-Ki Kim
E-mail(s)
kim750a11@gmail.com Phone
82-31-321-6351
Organization name
GreenGene Biotech Inc.
Department
GreenGene Biotech Inc.
Lab
Genomics & Genetics Ins.
Street address
38-2 Namdong
City
Yongin
State/province
Kyonggido
ZIP/Postal code
449-728
Country
South Korea
Samples (20)
GSM1349834 , GSM1349835 , GSM1349836 , GSM1349837 , GSM1349838 , GSM1349839
GSM1349840 ,
GSM1349841 ,
GSM1349842 ,
GSM1349843 ,
GSM1349844 ,
GSM1349845 ,
GSM1349846 ,
GSM1349847 ,
GSM1349848 ,
GSM1349849 ,
GSM1349850 ,
GSM1349851 ,
GSM1349852 ,
GSM1349853 Series (1)
GSE55984 Gene expression profiling in leaf and panicles of non-transgenic and HMB4 over-expression line.
Data table header descriptions ID Desc ORF
Data table ID Desc ORF Os03g0388900
"Peptidase C14, caspase catalytic domain containing protein."
Os03g0388900 Os09g0502900
Conserved hypothetical protein.
Os09g0502900 Os08g0511900
Peptidase M20 family protein.
Os08g0511900 Os05g0457200
Similar to Protein phpsphatase 2C (PP2C) (EC 3.1.3.16).
Os05g0457200 Os04g0643200
Amidase family protein.
Os04g0643200 Os12g0221400
Conserved hypothetical protein.
Os12g0221400 Os04g0499300
"Initiation factor eIF-4 gamma, middle domain containing protein."
Os04g0499300 Os11g0592400
CRS1/YhbY domain containing protein.
Os11g0592400 Os06g0186500
tRNA-binding arm domain containing protein.
Os06g0186500 Os02g0503100
Similar to Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid 3'-hydroxylase) (AtF3'H) (Cytochrome P450 75B1) (TRANSPARENT TESTA 7 protein).
Os02g0503100 Os05g0130100
Protein kinase domain containing protein.
Os05g0130100 Os02g0187100
"Virulence factor, pectin lyase fold family protein."
Os02g0187100 Os05g0196100
Similar to Multidrug-resistance associated protein 3.
Os05g0196100 Os01g0628700
Similar to Cytochrome P450 72A1 (EC 1.3.3.9) (CYPLXXII) (Secologanin synthase) (SLS).
Os01g0628700 Os05g0490800
Similar to Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha subunit G).
Os05g0490800 Os04g0137500
Similar to Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F subunit) (V-ATPase 14 kDa subunit).
Os04g0137500 Os01g0195400
Hypothetical protein.
Os01g0195400 Os06g0141000
Sugar transporter family protein.
Os06g0141000 Os03g0805600
Hypothetical protein.
Os03g0805600 Os06g0259000
Conserved hypothetical protein.
Os06g0259000
31588 2133 Kbytes .Supplementary file Size Download File type/resource GPL18435_Rice_135k_tiling_V2.ncd.gz
312 b
(ftp) (http) NCD
GPL18435_Rice_135k_tiling_V2.ndf.gz
6.0 Mb
(ftp) (http) NDF
Less...
More...