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Platform GPL18530 Query DataSets for GPL18530
Status Public on Apr 04, 2014
Title NimbleGen Aedes aegypti 12plex array [090305_Aedes_aegypti_TEfam_expr]
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Aedes aegypti
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description design name: 090305_Aedes_aegypti_TEfam_expr
DESIGN_ID: 9290

An expression design for 17,494 genes/transposable_ORFs from Aedes aegypti with fourteen 60-mer probe pairs (PM/MM) per gene. Each probe is replicated 3 times. The design includes random GC and other control probes.
The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files.

The SEQ_IDs are VectorBase GeneID number for the ORF to which the indicated probe is directed. Transposable element ORF to which the indicated probe is directed. These ORFs were predicted from the genome sequences of Aedes aegypti [PMID 17510324].

native array description file: 090305_Aedes_aegypti_TEfam_expr.ndf
native array description file: 090305_Aedes_aegypti_TEfam_expr.ngd
 
Submission date Apr 04, 2014
Last update date Apr 04, 2014
Contact name Susanta K. Behura
E-mail(s) behuras@missouri.edu
Organization name Univeristy of Missouri
Department Division of Animal Sciences
Street address 920 East Campus Drive
City Columbia
State/province Missouri
ZIP/Postal code 65211
Country USA
 
Samples (60) GSM1362955, GSM1362956, GSM1362957, GSM1362958, GSM1362959, GSM1362960 
Series (3)
GSE56508 Expression analysis of Aedes aegypti starins Moyo-S and Moyo-R in response to different serotypes of dengue virus
GSE56521 Sex-specific gene expression profiles of Aedes aegypti 24 hr pupal heads
GSE60496 A database of circadian and diel rhythmic gene expression in the yellow fever mosquito Aedes aegypti

Data table header descriptions
ID
ORF Link in Entrez Gene
DESCRIPTION Gene description as annotated and deposited in vectorbase
SPOT_ID SEQ_ID

Data table
ID ORF DESCRIPTION SPOT_ID
AAEL000001-RA AaeL_AAEL000001 bystin AAEL000001-RA
AAEL000002-RA AaeL_AAEL000002 hypothetical protein AAEL000002-RA
AAEL000003-RA AaeL_AAEL000003 conserved hypothetical protein AAEL000003-RA
AAEL000004-RA AaeL_AAEL000004 glycosyltransferase AAEL000004-RA
AAEL000005-RB AaeL_AAEL000005 hypothetical protein AAEL000005-RB
AAEL000005-RA AaeL_AAEL000005 hypothetical protein AAEL000005-RA
AAEL000006-RA AaeL_AAEL000006 phosphoenolpyruvate carboxykinase AAEL000006-RA
AAEL000007-RA AaeL_AAEL000007 conserved hypothetical protein AAEL000007-RA
AAEL000008-RA AaeL_AAEL000008 wd and tetratricopeptide repeat protein AAEL000008-RA
AAEL000009-RA AaeL_AAEL000009 hypothetical protein AAEL000009-RA
AAEL000010-RA AaeL_AAEL000010 ribosomal protein L36, putative AAEL000010-RA
AAEL000010-RB AaeL_AAEL000010 ribosomal protein L36, putative AAEL000010-RB
AAEL000011-RA AaeL_AAEL000011 conserved hypothetical protein AAEL000011-RA
AAEL000012-RA AaeL_AAEL000012 Gustatory receptor 61a, putative AAEL000012-RA
AAEL000013-RA AaeL_AAEL000013 peptidyl-prolyl cis-trans isomerase (cyclophilin) AAEL000013-RA
AAEL000014-RA AaeL_AAEL000014 cyclic-nucleotide-gated cation channel AAEL000014-RA
AAEL000015-RA AaeL_AAEL000015 phd finger transcription factor AAEL000015-RA
AAEL000016-RA AaeL_AAEL000016 conserved hypothetical protein AAEL000016-RA
AAEL000017-RA AaeL_AAEL000017 hypothetical protein AAEL000017-RA
AAEL000018-RA AaeL_AAEL000018 conserved hypothetical protein AAEL000018-RA

Total number of rows: 17494

Table truncated, full table size 1274 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL18530_090305_Aedes_aegypti_TEfam_expr.ndf.gz 8.2 Mb (ftp)(http) NDF
GPL18530_090305_Aedes_aegypti_TEfam_expr.ngd.gz 126.7 Kb (ftp)(http) NGD

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